Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01121 and ECD_01122 overlap by 4 nucleotides ECD_01122 and ECD_01123 overlap by 4 nucleotides ECD_01123 and ECD_01124 are separated by 13 nucleotides
ECD_01121: ECD_01121 - spermidine/putrescine ABC transporter periplasmic binding protein, at 1,185,151 to 1,186,197
_01121
ECD_01122: ECD_01122 - spermidine/putrescine ABC transporter permease, at 1,186,194 to 1,186,988
_01122
ECD_01123: ECD_01123 - spermidine/putrescine ABC transporter permease, at 1,186,985 to 1,187,812
_01123
ECD_01124: ECD_01124 - spermidine/putrescine ABC transporter ATPase, at 1,187,826 to 1,188,962
_01124
Position (kb)
1186
1187
1188 Strain fitness (log2 ratio)
-2
-1
0
1 at 1186.002 kb on - strand, within ECD_01121 at 1186.002 kb on - strand, within ECD_01121 at 1186.023 kb on - strand, within ECD_01121 at 1186.104 kb on - strand at 1186.110 kb on - strand at 1186.282 kb on - strand, within ECD_01122 at 1186.417 kb on - strand, within ECD_01122 at 1186.584 kb on - strand, within ECD_01122 at 1186.934 kb on - strand at 1187.176 kb on - strand, within ECD_01123 at 1187.649 kb on - strand, within ECD_01123 at 1188.067 kb on - strand, within ECD_01124 at 1188.067 kb on - strand, within ECD_01124 at 1188.128 kb on - strand, within ECD_01124
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,186,002 - ECD_01121 0.81 -0.4 1,186,002 - ECD_01121 0.81 -1.9 1,186,023 - ECD_01121 0.83 -1.1 1,186,104 - +1.7 1,186,110 - -0.6 1,186,282 - ECD_01122 0.11 -0.8 1,186,417 - ECD_01122 0.28 -0.3 1,186,584 - ECD_01122 0.49 -0.1 1,186,934 - +0.1 1,187,176 - ECD_01123 0.23 +0.4 1,187,649 - ECD_01123 0.80 -1.1 1,188,067 - ECD_01124 0.21 -0.8 1,188,067 - ECD_01124 0.21 +1.1 1,188,128 - ECD_01124 0.27 -0.2
Or see this region's nucleotide sequence