Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01082 and ECD_01083 are separated by 111 nucleotides ECD_01083 and ECD_01084 are separated by 198 nucleotides ECD_01084 and ECD_01085 are separated by 51 nucleotides
ECD_01082: ECD_01082 - 23S rRNA pseudouridine(955,2504,2580) synthase, at 1,147,507 to 1,148,466
_01082
ECD_01083: ECD_01083 - m(7)GTP pyrophosphatase, at 1,148,578 to 1,149,162
_01083
ECD_01084: ECD_01084 - DUF177 family protein, at 1,149,361 to 1,149,882
_01084
ECD_01085: ECD_01085 - 50S ribosomal subunit protein L32, at 1,149,934 to 1,150,107
_01085
Position (kb)
1148
1149
1150 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1147.665 kb on + strand, within ECD_01082 at 1147.668 kb on + strand, within ECD_01082 at 1147.707 kb on + strand, within ECD_01082 at 1147.793 kb on + strand, within ECD_01082 at 1147.793 kb on + strand, within ECD_01082 at 1147.793 kb on + strand, within ECD_01082 at 1147.795 kb on + strand, within ECD_01082 at 1147.844 kb on + strand, within ECD_01082 at 1147.862 kb on + strand, within ECD_01082 at 1148.121 kb on + strand, within ECD_01082 at 1148.166 kb on + strand, within ECD_01082 at 1148.208 kb on + strand, within ECD_01082 at 1148.247 kb on + strand, within ECD_01082 at 1148.247 kb on + strand, within ECD_01082 at 1148.476 kb on - strand at 1148.477 kb on + strand at 1148.477 kb on + strand at 1148.557 kb on - strand at 1148.743 kb on - strand, within ECD_01083 at 1148.750 kb on + strand, within ECD_01083 at 1148.750 kb on + strand, within ECD_01083 at 1148.751 kb on - strand, within ECD_01083 at 1148.751 kb on - strand, within ECD_01083 at 1148.856 kb on - strand, within ECD_01083 at 1148.856 kb on - strand, within ECD_01083 at 1148.856 kb on - strand, within ECD_01083 at 1148.856 kb on - strand, within ECD_01083 at 1148.950 kb on + strand, within ECD_01083 at 1148.950 kb on + strand, within ECD_01083 at 1148.951 kb on - strand, within ECD_01083 at 1148.968 kb on - strand, within ECD_01083 at 1148.972 kb on - strand, within ECD_01083 at 1149.180 kb on - strand at 1149.181 kb on + strand at 1149.181 kb on + strand at 1149.182 kb on - strand at 1149.209 kb on + strand at 1149.377 kb on + strand at 1149.402 kb on + strand at 1149.432 kb on + strand, within ECD_01084 at 1149.436 kb on + strand, within ECD_01084 at 1149.436 kb on + strand, within ECD_01084 at 1149.436 kb on + strand, within ECD_01084 at 1149.613 kb on + strand, within ECD_01084 at 1149.613 kb on + strand, within ECD_01084 at 1149.622 kb on + strand, within ECD_01084 at 1149.622 kb on + strand, within ECD_01084 at 1149.880 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,147,665 + ECD_01082 0.16 -1.1 1,147,668 + ECD_01082 0.17 +0.2 1,147,707 + ECD_01082 0.21 -0.1 1,147,793 + ECD_01082 0.30 -0.4 1,147,793 + ECD_01082 0.30 -0.6 1,147,793 + ECD_01082 0.30 -0.3 1,147,795 + ECD_01082 0.30 -0.4 1,147,844 + ECD_01082 0.35 +0.7 1,147,862 + ECD_01082 0.37 -0.9 1,148,121 + ECD_01082 0.64 -0.2 1,148,166 + ECD_01082 0.69 +0.4 1,148,208 + ECD_01082 0.73 -0.5 1,148,247 + ECD_01082 0.77 -0.3 1,148,247 + ECD_01082 0.77 -0.4 1,148,476 - +0.2 1,148,477 + +0.1 1,148,477 + +0.3 1,148,557 - -0.3 1,148,743 - ECD_01083 0.28 +0.2 1,148,750 + ECD_01083 0.29 -0.1 1,148,750 + ECD_01083 0.29 +0.2 1,148,751 - ECD_01083 0.30 -1.1 1,148,751 - ECD_01083 0.30 -0.9 1,148,856 - ECD_01083 0.48 +0.1 1,148,856 - ECD_01083 0.48 +0.8 1,148,856 - ECD_01083 0.48 -0.6 1,148,856 - ECD_01083 0.48 -0.9 1,148,950 + ECD_01083 0.64 -0.1 1,148,950 + ECD_01083 0.64 -1.3 1,148,951 - ECD_01083 0.64 -0.1 1,148,968 - ECD_01083 0.67 -1.5 1,148,972 - ECD_01083 0.67 -1.0 1,149,180 - +0.5 1,149,181 + -0.1 1,149,181 + -0.3 1,149,182 - +0.2 1,149,209 + -0.2 1,149,377 + -0.9 1,149,402 + -0.3 1,149,432 + ECD_01084 0.14 -1.5 1,149,436 + ECD_01084 0.14 -1.6 1,149,436 + ECD_01084 0.14 +1.4 1,149,436 + ECD_01084 0.14 -0.9 1,149,613 + ECD_01084 0.48 -0.9 1,149,613 + ECD_01084 0.48 -3.3 1,149,622 + ECD_01084 0.50 -0.9 1,149,622 + ECD_01084 0.50 -0.8 1,149,880 + -2.6
Or see this region's nucleotide sequence