Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00966 and ECD_00967 are separated by 31 nucleotides ECD_00967 and ECD_00968 are separated by 95 nucleotides ECD_00968 and ECD_00969 are separated by 172 nucleotides ECD_00969 and ECD_00970 are separated by 44 nucleotides
ECD_00966: ECD_00966 - DNA helicase IV, at 1,029,560 to 1,031,614
_00966
ECD_00967: ECD_00967 - methylglyoxal synthase, at 1,031,646 to 1,032,104
_00967
ECD_00968: ECD_00968 - UPF0319 family protein, at 1,032,200 to 1,032,862
_00968
ECD_00969: ECD_00969 - putative CoA-binding protein, at 1,033,035 to 1,033,448
_00969
ECD_00970: ECD_00970 - heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein, at 1,033,493 to 1,033,810
_00970
Position (kb)
1032
1033 Strain fitness (log2 ratio)
-1
0
1 at 1031.498 kb on + strand at 1031.957 kb on + strand, within ECD_00967 at 1031.977 kb on + strand, within ECD_00967 at 1031.983 kb on - strand, within ECD_00967 at 1031.983 kb on - strand, within ECD_00967 at 1032.066 kb on - strand at 1032.082 kb on - strand at 1032.110 kb on - strand at 1032.117 kb on + strand at 1032.143 kb on - strand at 1032.143 kb on - strand at 1032.349 kb on + strand, within ECD_00968 at 1032.632 kb on - strand, within ECD_00968 at 1032.632 kb on - strand, within ECD_00968 at 1032.633 kb on + strand, within ECD_00968 at 1032.633 kb on + strand, within ECD_00968 at 1032.634 kb on - strand, within ECD_00968 at 1032.634 kb on - strand, within ECD_00968 at 1032.974 kb on + strand at 1033.137 kb on + strand, within ECD_00969 at 1033.304 kb on + strand, within ECD_00969 at 1033.495 kb on - strand at 1033.593 kb on - strand, within ECD_00970 at 1033.593 kb on - strand, within ECD_00970 at 1033.593 kb on - strand, within ECD_00970 at 1033.593 kb on - strand, within ECD_00970 at 1033.842 kb on - strand at 1033.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,031,498 + -0.8 1,031,957 + ECD_00967 0.68 +0.0 1,031,977 + ECD_00967 0.72 +0.1 1,031,983 - ECD_00967 0.73 -0.1 1,031,983 - ECD_00967 0.73 -0.4 1,032,066 - +0.5 1,032,082 - +0.1 1,032,110 - -0.3 1,032,117 + +0.3 1,032,143 - -0.6 1,032,143 - +0.1 1,032,349 + ECD_00968 0.22 -1.4 1,032,632 - ECD_00968 0.65 -0.1 1,032,632 - ECD_00968 0.65 +0.8 1,032,633 + ECD_00968 0.65 +0.1 1,032,633 + ECD_00968 0.65 +0.7 1,032,634 - ECD_00968 0.65 -1.3 1,032,634 - ECD_00968 0.65 +1.0 1,032,974 + +0.1 1,033,137 + ECD_00969 0.25 -0.1 1,033,304 + ECD_00969 0.65 +0.8 1,033,495 - -0.1 1,033,593 - ECD_00970 0.31 -0.6 1,033,593 - ECD_00970 0.31 +0.4 1,033,593 - ECD_00970 0.31 -0.2 1,033,593 - ECD_00970 0.31 -0.1 1,033,842 - -0.2 1,033,842 - +0.5
Or see this region's nucleotide sequence