Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00703 and ECD_00704 are separated by 37 nucleotides ECD_00704 and ECD_00705 overlap by 4 nucleotides ECD_00705 and ECD_00706 are separated by 113 nucleotides ECD_00706 and ECD_00707 are separated by 315 nucleotides
ECD_00703: ECD_00703 - quinolinate synthase, subunit A, at 740,493 to 741,536
_00703
ECD_00704: ECD_00704 - nicotinamide riboside transporter, at 741,574 to 742,293
_00704
ECD_00705: ECD_00705 - zinc efflux system, at 742,290 to 743,231
_00705
ECD_00706: ECD_00706 - putative periplasmic protein, at 743,345 to 743,725
_00706
ECD_00707: ECD_00707 - 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible, at 744,041 to 745,093
_00707
Position (kb) 742
743
744 Strain fitness (log2 ratio) -1
0
1
2
3 at 741.503 kb on + strand at 741.605 kb on + strand at 741.605 kb on + strand at 741.609 kb on + strand at 741.610 kb on - strand at 741.611 kb on + strand at 741.611 kb on + strand at 742.007 kb on + strand, within ECD_00704 at 742.013 kb on + strand, within ECD_00704 at 742.221 kb on + strand, within ECD_00704 at 742.500 kb on + strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.506 kb on + strand, within ECD_00705 at 742.506 kb on + strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.547 kb on + strand, within ECD_00705 at 742.704 kb on - strand, within ECD_00705 at 742.774 kb on - strand, within ECD_00705 at 742.825 kb on - strand, within ECD_00705 at 742.933 kb on - strand, within ECD_00705 at 742.933 kb on - strand, within ECD_00705 at 742.944 kb on + strand, within ECD_00705 at 743.073 kb on - strand, within ECD_00705 at 743.186 kb on + strand at 743.260 kb on + strand at 743.261 kb on - strand at 743.346 kb on + strand at 743.537 kb on + strand, within ECD_00706 at 743.557 kb on + strand, within ECD_00706 at 743.699 kb on + strand at 743.739 kb on + strand at 743.749 kb on - strand at 743.790 kb on - strand at 743.791 kb on + strand at 743.792 kb on - strand at 743.999 kb on + strand at 743.999 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 741,503 + +0.6 741,605 + +0.5 741,605 + +0.3 741,609 + -0.0 741,610 - +1.5 741,611 + +0.3 741,611 + +1.5 742,007 + ECD_00704 0.60 +0.4 742,013 + ECD_00704 0.61 +0.2 742,221 + ECD_00704 0.90 -0.5 742,500 + ECD_00705 0.22 +0.4 742,501 - ECD_00705 0.22 +1.1 742,501 - ECD_00705 0.22 +0.6 742,501 - ECD_00705 0.22 -0.9 742,501 - ECD_00705 0.22 +0.5 742,501 - ECD_00705 0.22 +1.2 742,501 - ECD_00705 0.22 +0.6 742,501 - ECD_00705 0.22 +0.4 742,501 - ECD_00705 0.22 +3.4 742,501 - ECD_00705 0.22 -0.5 742,501 - ECD_00705 0.22 +0.3 742,506 + ECD_00705 0.23 -0.9 742,506 + ECD_00705 0.23 +1.9 742,507 - ECD_00705 0.23 +1.6 742,507 - ECD_00705 0.23 +0.6 742,507 - ECD_00705 0.23 -0.1 742,507 - ECD_00705 0.23 +0.3 742,507 - ECD_00705 0.23 -0.7 742,547 + ECD_00705 0.27 +1.5 742,704 - ECD_00705 0.44 -0.9 742,774 - ECD_00705 0.51 +0.2 742,825 - ECD_00705 0.57 +0.4 742,933 - ECD_00705 0.68 -1.1 742,933 - ECD_00705 0.68 +0.5 742,944 + ECD_00705 0.69 +0.7 743,073 - ECD_00705 0.83 -0.5 743,186 + -0.1 743,260 + -0.6 743,261 - +0.1 743,346 + -1.0 743,537 + ECD_00706 0.50 +0.1 743,557 + ECD_00706 0.56 +0.5 743,699 + -0.4 743,739 + +0.7 743,749 - -0.6 743,790 - -0.1 743,791 + -1.0 743,792 - +0.1 743,999 + +0.5 743,999 + -0.1
Or see this region's nucleotide sequence