Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00692 and ECD_00693 are separated by 15 nucleotides ECD_00693 and ECD_00694 are separated by 14 nucleotides ECD_00694 and ECD_00695 overlap by 1 nucleotides ECD_00695 and ECD_00696 are separated by 149 nucleotides ECD_00696 and ECD_00697 overlap by 4 nucleotides
ECD_00692: ECD_00692 - cytochrome d terminal oxidase, subunit I, at 730,119 to 731,687
_00692
ECD_00693: ECD_00693 - cytochrome d terminal oxidase, subunit II, at 731,703 to 732,842
_00693
ECD_00694: ECD_00694 - cytochrome d (bd-I) ubiquinol oxidase subunit X, at 732,857 to 732,970
_00694
ECD_00695: ECD_00695 - putative inner membrane protein in cydABX-ybgE operon, at 732,970 to 733,263
_00695
ECD_00696: ECD_00696 - acyl-CoA thioester hydrolase, at 733,413 to 733,817
_00696
ECD_00697: ECD_00697 - membrane spanning protein in TolA-TolQ-TolR complex, at 733,814 to 734,506
_00697
Position (kb) 731
732
733 Strain fitness (log2 ratio) -2
-1
0
1 at 730.734 kb on + strand, within ECD_00692 at 732.812 kb on + strand at 732.821 kb on + strand at 732.821 kb on + strand at 732.837 kb on + strand at 732.840 kb on + strand at 732.840 kb on + strand at 732.844 kb on + strand at 732.844 kb on + strand at 733.063 kb on - strand, within ECD_00695 at 733.125 kb on - strand, within ECD_00695 at 733.365 kb on + strand at 733.365 kb on + strand at 733.365 kb on + strand at 733.409 kb on + strand at 733.418 kb on + strand at 733.460 kb on + strand, within ECD_00696 at 733.494 kb on + strand, within ECD_00696 at 733.588 kb on + strand, within ECD_00696 at 733.592 kb on + strand, within ECD_00696 at 733.608 kb on + strand, within ECD_00696 at 733.657 kb on + strand, within ECD_00696 at 733.697 kb on + strand, within ECD_00696 at 733.715 kb on + strand, within ECD_00696
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 730,734 + ECD_00692 0.39 +1.1 732,812 + -1.9 732,821 + -0.3 732,821 + -0.9 732,837 + -1.6 732,840 + +0.2 732,840 + +0.3 732,844 + -0.3 732,844 + -0.7 733,063 - ECD_00695 0.32 +1.4 733,125 - ECD_00695 0.53 +0.7 733,365 + +0.8 733,365 + +0.4 733,365 + -0.3 733,409 + -0.1 733,418 + -0.5 733,460 + ECD_00696 0.12 -0.2 733,494 + ECD_00696 0.20 +0.6 733,588 + ECD_00696 0.43 +0.6 733,592 + ECD_00696 0.44 -0.7 733,608 + ECD_00696 0.48 -0.2 733,657 + ECD_00696 0.60 +0.2 733,697 + ECD_00696 0.70 -0.3 733,715 + ECD_00696 0.75 +0.2
Or see this region's nucleotide sequence