Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00673 and ECD_00674 are separated by 35 nucleotides ECD_00674 and ECD_00675 overlap by 4 nucleotides ECD_00675 and ECD_00676 are separated by 151 nucleotides
ECD_00673: ECD_00673 - UPF0271 family protein, at 703,729 to 704,463
_00673
ECD_00674: ECD_00674 - endonuclease VIII and 5-formyluracil/5-hydroxymethyluracil DNA glycosylase, at 704,499 to 705,290
_00674
ECD_00675: ECD_00675 - regulator of aidB expression; inner membrane protein, at 705,287 to 706,333
_00675
ECD_00676: ECD_00676 - putative fimbrial protein, at 706,485 to 707,546
_00676
Position (kb) 705
706
707 Strain fitness (log2 ratio) -1
0
1 at 704.304 kb on - strand, within ECD_00673 at 704.427 kb on + strand at 704.471 kb on + strand at 704.687 kb on - strand, within ECD_00674 at 704.810 kb on + strand, within ECD_00674 at 705.006 kb on + strand, within ECD_00674 at 705.006 kb on + strand, within ECD_00674 at 705.006 kb on + strand, within ECD_00674 at 705.155 kb on + strand, within ECD_00674 at 705.155 kb on + strand, within ECD_00674 at 705.156 kb on - strand, within ECD_00674 at 705.352 kb on + strand at 705.385 kb on + strand at 705.470 kb on - strand, within ECD_00675 at 705.484 kb on + strand, within ECD_00675 at 705.627 kb on + strand, within ECD_00675 at 705.627 kb on + strand, within ECD_00675 at 705.628 kb on - strand, within ECD_00675 at 705.628 kb on - strand, within ECD_00675 at 705.628 kb on - strand, within ECD_00675 at 705.628 kb on - strand, within ECD_00675 at 705.790 kb on + strand, within ECD_00675 at 705.911 kb on - strand, within ECD_00675 at 706.266 kb on - strand at 706.497 kb on - strand at 706.638 kb on - strand, within ECD_00676 at 706.929 kb on - strand, within ECD_00676 at 706.999 kb on + strand, within ECD_00676 at 707.000 kb on - strand, within ECD_00676 at 707.021 kb on - strand, within ECD_00676 at 707.158 kb on + strand, within ECD_00676 at 707.159 kb on - strand, within ECD_00676 at 707.261 kb on - strand, within ECD_00676 at 707.261 kb on - strand, within ECD_00676 at 707.303 kb on - strand, within ECD_00676
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 704,304 - ECD_00673 0.78 +0.4 704,427 + +0.1 704,471 + +0.6 704,687 - ECD_00674 0.24 +0.0 704,810 + ECD_00674 0.39 +1.2 705,006 + ECD_00674 0.64 -0.0 705,006 + ECD_00674 0.64 -0.7 705,006 + ECD_00674 0.64 -1.2 705,155 + ECD_00674 0.83 +0.2 705,155 + ECD_00674 0.83 -0.6 705,156 - ECD_00674 0.83 +0.7 705,352 + +0.6 705,385 + -1.1 705,470 - ECD_00675 0.17 -1.5 705,484 + ECD_00675 0.19 +0.2 705,627 + ECD_00675 0.32 -1.4 705,627 + ECD_00675 0.32 +0.3 705,628 - ECD_00675 0.33 -0.1 705,628 - ECD_00675 0.33 +1.2 705,628 - ECD_00675 0.33 +0.6 705,628 - ECD_00675 0.33 +0.3 705,790 + ECD_00675 0.48 -0.2 705,911 - ECD_00675 0.60 -0.4 706,266 - +0.4 706,497 - +0.2 706,638 - ECD_00676 0.14 -0.0 706,929 - ECD_00676 0.42 -0.7 706,999 + ECD_00676 0.48 -0.2 707,000 - ECD_00676 0.48 +0.8 707,021 - ECD_00676 0.50 +0.5 707,158 + ECD_00676 0.63 -0.2 707,159 - ECD_00676 0.63 +0.5 707,261 - ECD_00676 0.73 -0.7 707,261 - ECD_00676 0.73 -0.0 707,303 - ECD_00676 0.77 +0.5
Or see this region's nucleotide sequence