Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00457 and ECD_00458 are separated by 12 nucleotides ECD_00458 and ECD_00459 are separated by 99 nucleotides ECD_00459 and ECD_00460 are separated by 31 nucleotides ECD_00460 and ECD_00461 overlap by 142 nucleotides
ECD_00457: ECD_00457 - glyoxylate carboligase, at 503,061 to 504,842
_00457
ECD_00458: ECD_00458 - hydroxypyruvate isomerase, at 504,855 to 505,631
_00458
ECD_00459: ECD_00459 - tartronate semialdehyde reductase, NADH-dependent, at 505,731 to 506,609
_00459
ECD_00460: ECD_00460 - hypothetical protein, at 506,641 to 506,919
_00460
ECD_00461: ECD_00461 - putative allantoin transporter, at 506,778 to 508,232
_00461
Position (kb) 505
506
507 Strain fitness (log2 ratio) -1
0
1
2 at 505.807 kb on + strand at 505.807 kb on + strand at 506.004 kb on - strand, within ECD_00459 at 506.129 kb on + strand, within ECD_00459 at 506.165 kb on + strand, within ECD_00459 at 506.166 kb on - strand, within ECD_00459 at 506.515 kb on + strand, within ECD_00459 at 507.079 kb on + strand, within ECD_00461 at 507.265 kb on + strand, within ECD_00461 at 507.351 kb on + strand, within ECD_00461 at 507.484 kb on + strand, within ECD_00461
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 505,807 + -0.3 505,807 + +0.6 506,004 - ECD_00459 0.31 -0.6 506,129 + ECD_00459 0.45 +0.2 506,165 + ECD_00459 0.49 -0.1 506,166 - ECD_00459 0.49 -0.0 506,515 + ECD_00459 0.89 +1.1 507,079 + ECD_00461 0.21 +1.9 507,265 + ECD_00461 0.33 +0.8 507,351 + ECD_00461 0.39 +0.8 507,484 + ECD_00461 0.49 -0.5
Or see this region's nucleotide sequence