Strain Fitness in Escherichia coli BL21 around ECD_00324

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00323 and ECD_00324 are separated by 351 nucleotidesECD_00324 and ECD_00325 are separated by 12 nucleotides ECD_00323: ECD_00323 - D-alanyl-D-alanine- carboxypeptidase/endopeptidase; penicillin-binding protein; weak beta-lactamase, at 359,755 to 360,912 _00323 ECD_00324: ECD_00324 - peptide antibiotic transporter, at 361,264 to 362,484 _00324 ECD_00325: ECD_00325 - microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein, at 362,497 to 363,591 _00325 Position (kb) 361 362 363Strain fitness (log2 ratio) -2 -1 0 1 2at 360.305 kb on + strand, within ECD_00323at 360.305 kb on + strand, within ECD_00323at 360.305 kb on + strand, within ECD_00323at 360.305 kb on + strand, within ECD_00323at 360.305 kb on + strand, within ECD_00323at 360.360 kb on + strand, within ECD_00323at 360.539 kb on + strand, within ECD_00323at 360.539 kb on + strand, within ECD_00323at 360.539 kb on + strand, within ECD_00323at 360.539 kb on + strand, within ECD_00323at 360.573 kb on + strand, within ECD_00323at 360.574 kb on - strand, within ECD_00323at 360.574 kb on - strand, within ECD_00323at 360.574 kb on - strand, within ECD_00323at 360.590 kb on - strand, within ECD_00323at 360.693 kb on + strand, within ECD_00323at 360.696 kb on + strand, within ECD_00323at 360.696 kb on + strand, within ECD_00323at 360.716 kb on + strand, within ECD_00323at 360.747 kb on + strand, within ECD_00323at 360.813 kb on + strandat 360.951 kb on - strandat 360.955 kb on - strandat 360.955 kb on - strandat 360.996 kb on + strandat 360.996 kb on + strandat 360.999 kb on + strandat 361.087 kb on + strandat 361.088 kb on - strandat 361.091 kb on + strandat 361.150 kb on + strandat 361.162 kb on + strandat 361.202 kb on + strandat 361.202 kb on + strandat 361.203 kb on - strandat 361.234 kb on + strandat 361.263 kb on + strandat 361.263 kb on + strandat 361.264 kb on - strandat 361.453 kb on + strand, within ECD_00324at 361.454 kb on - strand, within ECD_00324at 361.597 kb on + strand, within ECD_00324at 361.610 kb on - strand, within ECD_00324at 361.747 kb on + strand, within ECD_00324at 361.748 kb on - strand, within ECD_00324at 361.764 kb on + strand, within ECD_00324at 361.780 kb on + strand, within ECD_00324at 361.783 kb on + strand, within ECD_00324at 361.783 kb on + strand, within ECD_00324at 361.784 kb on - strand, within ECD_00324at 361.875 kb on + strand, within ECD_00324at 362.099 kb on - strand, within ECD_00324at 362.211 kb on + strand, within ECD_00324at 362.211 kb on + strand, within ECD_00324at 362.212 kb on - strand, within ECD_00324at 362.212 kb on - strand, within ECD_00324at 362.212 kb on - strand, within ECD_00324at 362.212 kb on - strand, within ECD_00324at 362.215 kb on + strand, within ECD_00324at 362.215 kb on + strand, within ECD_00324at 362.215 kb on + strand, within ECD_00324at 362.216 kb on - strand, within ECD_00324at 362.216 kb on - strand, within ECD_00324at 362.216 kb on - strand, within ECD_00324at 362.216 kb on - strand, within ECD_00324at 362.239 kb on + strand, within ECD_00324at 362.239 kb on + strand, within ECD_00324at 362.240 kb on - strand, within ECD_00324at 362.373 kb on + strandat 362.374 kb on - strandat 362.406 kb on + strandat 362.406 kb on + strandat 362.410 kb on + strandat 362.411 kb on - strandat 362.411 kb on - strandat 362.472 kb on + strandat 362.472 kb on + strandat 362.495 kb on + strandat 362.495 kb on + strandat 362.559 kb on + strandat 362.559 kb on + strandat 362.560 kb on - strandat 362.562 kb on + strandat 362.563 kb on - strandat 362.563 kb on - strandat 362.603 kb on + strandat 362.762 kb on - strand, within ECD_00325at 362.790 kb on - strand, within ECD_00325at 362.969 kb on + strand, within ECD_00325at 363.057 kb on + strand, within ECD_00325at 363.058 kb on - strand, within ECD_00325at 363.135 kb on + strand, within ECD_00325at 363.135 kb on + strand, within ECD_00325at 363.135 kb on + strand, within ECD_00325at 363.140 kb on - strand, within ECD_00325at 363.167 kb on - strand, within ECD_00325at 363.181 kb on + strand, within ECD_00325at 363.304 kb on - strand, within ECD_00325at 363.387 kb on - strand, within ECD_00325

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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360,305 + ECD_00323 0.47 -0.7
360,305 + ECD_00323 0.47 -0.1
360,305 + ECD_00323 0.47 -0.1
360,305 + ECD_00323 0.47 +0.1
360,305 + ECD_00323 0.47 +0.4
360,360 + ECD_00323 0.52 +0.6
360,539 + ECD_00323 0.68 -0.1
360,539 + ECD_00323 0.68 +1.6
360,539 + ECD_00323 0.68 +0.1
360,539 + ECD_00323 0.68 +0.2
360,573 + ECD_00323 0.71 +1.2
360,574 - ECD_00323 0.71 +0.1
360,574 - ECD_00323 0.71 +1.6
360,574 - ECD_00323 0.71 +0.1
360,590 - ECD_00323 0.72 +1.9
360,693 + ECD_00323 0.81 +0.6
360,696 + ECD_00323 0.81 -0.4
360,696 + ECD_00323 0.81 +0.2
360,716 + ECD_00323 0.83 -0.2
360,747 + ECD_00323 0.86 +0.4
360,813 + +0.7
360,951 - +1.9
360,955 - -1.2
360,955 - -0.3
360,996 + -0.5
360,996 + +0.3
360,999 + -0.3
361,087 + +0.1
361,088 - -0.1
361,091 + +0.0
361,150 + +0.4
361,162 + +0.5
361,202 + -0.2
361,202 + -0.4
361,203 - +1.1
361,234 + -0.7
361,263 + +1.0
361,263 + +0.6
361,264 - +0.8
361,453 + ECD_00324 0.15 +0.2
361,454 - ECD_00324 0.16 -0.3
361,597 + ECD_00324 0.27 +1.7
361,610 - ECD_00324 0.28 -0.1
361,747 + ECD_00324 0.40 +1.6
361,748 - ECD_00324 0.40 -0.4
361,764 + ECD_00324 0.41 +0.5
361,780 + ECD_00324 0.42 +0.3
361,783 + ECD_00324 0.43 -0.2
361,783 + ECD_00324 0.43 +0.2
361,784 - ECD_00324 0.43 +0.2
361,875 + ECD_00324 0.50 -0.4
362,099 - ECD_00324 0.68 -0.6
362,211 + ECD_00324 0.78 -0.6
362,211 + ECD_00324 0.78 -0.6
362,212 - ECD_00324 0.78 +0.4
362,212 - ECD_00324 0.78 +1.2
362,212 - ECD_00324 0.78 +0.0
362,212 - ECD_00324 0.78 -0.6
362,215 + ECD_00324 0.78 -0.2
362,215 + ECD_00324 0.78 +0.6
362,215 + ECD_00324 0.78 +1.2
362,216 - ECD_00324 0.78 -0.1
362,216 - ECD_00324 0.78 +0.4
362,216 - ECD_00324 0.78 -0.1
362,216 - ECD_00324 0.78 -0.6
362,239 + ECD_00324 0.80 -2.0
362,239 + ECD_00324 0.80 +0.2
362,240 - ECD_00324 0.80 -0.1
362,373 + -0.8
362,374 - -0.1
362,406 + -0.1
362,406 + +0.6
362,410 + -0.1
362,411 - +0.6
362,411 - -0.5
362,472 + -0.1
362,472 + +1.1
362,495 + +0.1
362,495 + +1.2
362,559 + +0.3
362,559 + -0.4
362,560 - -0.3
362,562 + +0.4
362,563 - +0.1
362,563 - -0.8
362,603 + -0.7
362,762 - ECD_00325 0.24 +1.4
362,790 - ECD_00325 0.27 +1.5
362,969 + ECD_00325 0.43 +0.3
363,057 + ECD_00325 0.51 -0.1
363,058 - ECD_00325 0.51 +0.5
363,135 + ECD_00325 0.58 +1.3
363,135 + ECD_00325 0.58 -0.2
363,135 + ECD_00325 0.58 +0.8
363,140 - ECD_00325 0.59 -0.9
363,167 - ECD_00325 0.61 +0.4
363,181 + ECD_00325 0.62 -0.1
363,304 - ECD_00325 0.74 +1.1
363,387 - ECD_00325 0.81 +0.9

Or see this region's nucleotide sequence