Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00307 and ECD_00308 are separated by 101 nucleotides ECD_00308 and ECD_00309 are separated by 225 nucleotides ECD_00309 and ECD_00310 are separated by 92 nucleotides
ECD_00307: ECD_00307 - 3-hydroxyphenylpropionic transporter, at 344,794 to 346,005
_00307
ECD_00308: ECD_00308 - DUF2058 family protein, at 346,107 to 346,646
_00308
ECD_00309: ECD_00309 - S-formylglutathione hydrolase, at 346,872 to 347,705
_00309
ECD_00310: ECD_00310 - alcohol dehydrogenase class III; glutathione-dependent formaldehyde dehydrogenase, at 347,798 to 348,907
_00310
Position (kb) 346
347
348 Strain fitness (log2 ratio) -1
0
1 at 345.984 kb on - strand at 346.013 kb on + strand at 346.014 kb on - strand at 346.016 kb on + strand at 346.046 kb on + strand at 346.123 kb on + strand at 346.150 kb on + strand at 346.241 kb on + strand, within ECD_00308 at 346.274 kb on + strand, within ECD_00308 at 346.311 kb on + strand, within ECD_00308 at 346.313 kb on + strand, within ECD_00308 at 346.313 kb on + strand, within ECD_00308 at 346.334 kb on + strand, within ECD_00308 at 346.445 kb on + strand, within ECD_00308 at 346.488 kb on - strand, within ECD_00308 at 346.500 kb on + strand, within ECD_00308 at 346.556 kb on + strand, within ECD_00308 at 346.558 kb on + strand, within ECD_00308 at 346.558 kb on + strand, within ECD_00308 at 346.645 kb on - strand at 346.650 kb on + strand at 346.650 kb on + strand at 346.654 kb on + strand at 346.654 kb on + strand at 346.654 kb on + strand at 346.654 kb on + strand at 346.654 kb on + strand at 346.654 kb on + strand at 346.655 kb on - strand at 346.655 kb on - strand at 346.868 kb on - strand at 346.880 kb on + strand at 346.908 kb on - strand at 346.937 kb on - strand at 347.114 kb on - strand, within ECD_00309 at 347.146 kb on + strand, within ECD_00309 at 347.221 kb on + strand, within ECD_00309 at 347.221 kb on + strand, within ECD_00309 at 347.322 kb on + strand, within ECD_00309 at 347.323 kb on - strand, within ECD_00309 at 347.346 kb on - strand, within ECD_00309 at 347.347 kb on + strand, within ECD_00309 at 347.348 kb on - strand, within ECD_00309 at 347.354 kb on - strand, within ECD_00309 at 347.362 kb on + strand, within ECD_00309 at 347.399 kb on - strand, within ECD_00309 at 347.483 kb on + strand, within ECD_00309 at 347.483 kb on + strand, within ECD_00309 at 347.522 kb on + strand, within ECD_00309 at 347.567 kb on - strand, within ECD_00309 at 347.567 kb on - strand, within ECD_00309 at 347.567 kb on - strand, within ECD_00309 at 347.567 kb on - strand, within ECD_00309 at 347.647 kb on + strand at 347.713 kb on + strand at 347.756 kb on + strand at 347.756 kb on + strand at 347.756 kb on + strand at 347.756 kb on + strand at 347.756 kb on + strand at 347.757 kb on - strand at 347.784 kb on - strand at 347.785 kb on + strand at 347.879 kb on - strand at 347.879 kb on - strand at 347.879 kb on - strand at 348.130 kb on + strand, within ECD_00310 at 348.361 kb on + strand, within ECD_00310 at 348.362 kb on - strand, within ECD_00310 at 348.477 kb on + strand, within ECD_00310 at 348.478 kb on - strand, within ECD_00310 at 348.505 kb on - strand, within ECD_00310 at 348.510 kb on + strand, within ECD_00310 at 348.645 kb on + strand, within ECD_00310
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 345,984 - -1.5 346,013 + -0.0 346,014 - +1.7 346,016 + -0.5 346,046 + +0.3 346,123 + -0.2 346,150 + -0.5 346,241 + ECD_00308 0.25 -0.7 346,274 + ECD_00308 0.31 -0.3 346,311 + ECD_00308 0.38 -0.8 346,313 + ECD_00308 0.38 -0.3 346,313 + ECD_00308 0.38 -0.4 346,334 + ECD_00308 0.42 +0.8 346,445 + ECD_00308 0.63 -0.8 346,488 - ECD_00308 0.71 +0.0 346,500 + ECD_00308 0.73 +0.3 346,556 + ECD_00308 0.83 -0.3 346,558 + ECD_00308 0.84 -0.8 346,558 + ECD_00308 0.84 -0.2 346,645 - -0.3 346,650 + -0.4 346,650 + -0.1 346,654 + +0.9 346,654 + +1.7 346,654 + -1.1 346,654 + +0.8 346,654 + +0.5 346,654 + -0.2 346,655 - +0.0 346,655 - +0.3 346,868 - -0.2 346,880 + -0.0 346,908 - +0.3 346,937 - -0.9 347,114 - ECD_00309 0.29 +0.6 347,146 + ECD_00309 0.33 -0.4 347,221 + ECD_00309 0.42 -0.1 347,221 + ECD_00309 0.42 -0.8 347,322 + ECD_00309 0.54 -0.1 347,323 - ECD_00309 0.54 +0.4 347,346 - ECD_00309 0.57 +0.5 347,347 + ECD_00309 0.57 +1.2 347,348 - ECD_00309 0.57 +0.8 347,354 - ECD_00309 0.58 -0.2 347,362 + ECD_00309 0.59 +0.7 347,399 - ECD_00309 0.63 -0.8 347,483 + ECD_00309 0.73 +1.0 347,483 + ECD_00309 0.73 +0.5 347,522 + ECD_00309 0.78 -0.7 347,567 - ECD_00309 0.83 +0.5 347,567 - ECD_00309 0.83 -0.7 347,567 - ECD_00309 0.83 +0.5 347,567 - ECD_00309 0.83 +0.8 347,647 + -0.3 347,713 + -0.9 347,756 + +0.7 347,756 + -0.5 347,756 + +0.7 347,756 + +0.5 347,756 + +0.5 347,757 - -0.1 347,784 - -0.4 347,785 + +0.4 347,879 - -0.4 347,879 - -0.4 347,879 - -0.0 348,130 + ECD_00310 0.30 +0.7 348,361 + ECD_00310 0.51 +0.7 348,362 - ECD_00310 0.51 +0.6 348,477 + ECD_00310 0.61 -0.4 348,478 - ECD_00310 0.61 -0.2 348,505 - ECD_00310 0.64 -0.1 348,510 + ECD_00310 0.64 +0.6 348,645 + ECD_00310 0.76 +0.2
Or see this region's nucleotide sequence