Strain Fitness in Escherichia coli BL21 around ECD_00308

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00307 and ECD_00308 are separated by 101 nucleotidesECD_00308 and ECD_00309 are separated by 225 nucleotides ECD_00307: ECD_00307 - 3-hydroxyphenylpropionic transporter, at 344,794 to 346,005 _00307 ECD_00308: ECD_00308 - DUF2058 family protein, at 346,107 to 346,646 _00308 ECD_00309: ECD_00309 - S-formylglutathione hydrolase, at 346,872 to 347,705 _00309 Position (kb) 346 347Strain fitness (log2 ratio) -1 0 1at 345.226 kb on + strand, within ECD_00307at 345.227 kb on - strand, within ECD_00307at 345.287 kb on + strand, within ECD_00307at 345.287 kb on + strand, within ECD_00307at 345.416 kb on + strand, within ECD_00307at 345.464 kb on - strand, within ECD_00307at 345.487 kb on + strand, within ECD_00307at 345.632 kb on + strand, within ECD_00307at 345.652 kb on + strand, within ECD_00307at 345.652 kb on + strand, within ECD_00307at 345.652 kb on + strand, within ECD_00307at 345.665 kb on + strand, within ECD_00307at 345.665 kb on + strand, within ECD_00307at 345.665 kb on + strand, within ECD_00307at 345.702 kb on + strand, within ECD_00307at 345.702 kb on + strand, within ECD_00307at 345.708 kb on + strand, within ECD_00307at 345.709 kb on - strand, within ECD_00307at 345.709 kb on - strand, within ECD_00307at 345.787 kb on + strand, within ECD_00307at 345.849 kb on + strand, within ECD_00307at 345.850 kb on - strand, within ECD_00307at 345.984 kb on - strandat 346.013 kb on + strandat 346.014 kb on - strandat 346.016 kb on + strandat 346.046 kb on + strandat 346.123 kb on + strandat 346.150 kb on + strandat 346.241 kb on + strand, within ECD_00308at 346.274 kb on + strand, within ECD_00308at 346.311 kb on + strand, within ECD_00308at 346.313 kb on + strand, within ECD_00308at 346.313 kb on + strand, within ECD_00308at 346.334 kb on + strand, within ECD_00308at 346.445 kb on + strand, within ECD_00308at 346.488 kb on - strand, within ECD_00308at 346.500 kb on + strand, within ECD_00308at 346.556 kb on + strand, within ECD_00308at 346.558 kb on + strand, within ECD_00308at 346.558 kb on + strand, within ECD_00308at 346.645 kb on - strandat 346.650 kb on + strandat 346.650 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.655 kb on - strandat 346.655 kb on - strandat 346.868 kb on - strandat 346.880 kb on + strandat 346.908 kb on - strandat 346.937 kb on - strandat 347.114 kb on - strand, within ECD_00309at 347.146 kb on + strand, within ECD_00309at 347.221 kb on + strand, within ECD_00309at 347.221 kb on + strand, within ECD_00309at 347.322 kb on + strand, within ECD_00309at 347.323 kb on - strand, within ECD_00309at 347.346 kb on - strand, within ECD_00309at 347.347 kb on + strand, within ECD_00309at 347.348 kb on - strand, within ECD_00309at 347.354 kb on - strand, within ECD_00309at 347.362 kb on + strand, within ECD_00309at 347.399 kb on - strand, within ECD_00309at 347.483 kb on + strand, within ECD_00309at 347.483 kb on + strand, within ECD_00309at 347.522 kb on + strand, within ECD_00309at 347.567 kb on - strand, within ECD_00309at 347.567 kb on - strand, within ECD_00309at 347.567 kb on - strand, within ECD_00309at 347.567 kb on - strand, within ECD_00309

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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345,226 + ECD_00307 0.36 -0.3
345,227 - ECD_00307 0.36 +0.5
345,287 + ECD_00307 0.41 +1.2
345,287 + ECD_00307 0.41 +0.0
345,416 + ECD_00307 0.51 +0.3
345,464 - ECD_00307 0.55 -0.2
345,487 + ECD_00307 0.57 +0.3
345,632 + ECD_00307 0.69 +0.3
345,652 + ECD_00307 0.71 -0.5
345,652 + ECD_00307 0.71 -0.1
345,652 + ECD_00307 0.71 +0.3
345,665 + ECD_00307 0.72 +0.5
345,665 + ECD_00307 0.72 +0.3
345,665 + ECD_00307 0.72 +0.1
345,702 + ECD_00307 0.75 +0.7
345,702 + ECD_00307 0.75 -0.4
345,708 + ECD_00307 0.75 +0.6
345,709 - ECD_00307 0.75 +0.8
345,709 - ECD_00307 0.75 +0.2
345,787 + ECD_00307 0.82 +1.3
345,849 + ECD_00307 0.87 +0.1
345,850 - ECD_00307 0.87 +0.5
345,984 - -1.5
346,013 + -0.0
346,014 - +1.7
346,016 + -0.5
346,046 + +0.3
346,123 + -0.2
346,150 + -0.5
346,241 + ECD_00308 0.25 -0.7
346,274 + ECD_00308 0.31 -0.3
346,311 + ECD_00308 0.38 -0.8
346,313 + ECD_00308 0.38 -0.3
346,313 + ECD_00308 0.38 -0.4
346,334 + ECD_00308 0.42 +0.8
346,445 + ECD_00308 0.63 -0.8
346,488 - ECD_00308 0.71 +0.0
346,500 + ECD_00308 0.73 +0.3
346,556 + ECD_00308 0.83 -0.3
346,558 + ECD_00308 0.84 -0.8
346,558 + ECD_00308 0.84 -0.2
346,645 - -0.3
346,650 + -0.4
346,650 + -0.1
346,654 + +0.9
346,654 + +1.7
346,654 + -1.1
346,654 + +0.8
346,654 + +0.5
346,654 + -0.2
346,655 - +0.0
346,655 - +0.3
346,868 - -0.2
346,880 + -0.0
346,908 - +0.3
346,937 - -0.9
347,114 - ECD_00309 0.29 +0.6
347,146 + ECD_00309 0.33 -0.4
347,221 + ECD_00309 0.42 -0.1
347,221 + ECD_00309 0.42 -0.8
347,322 + ECD_00309 0.54 -0.1
347,323 - ECD_00309 0.54 +0.4
347,346 - ECD_00309 0.57 +0.5
347,347 + ECD_00309 0.57 +1.2
347,348 - ECD_00309 0.57 +0.8
347,354 - ECD_00309 0.58 -0.2
347,362 + ECD_00309 0.59 +0.7
347,399 - ECD_00309 0.63 -0.8
347,483 + ECD_00309 0.73 +1.0
347,483 + ECD_00309 0.73 +0.5
347,522 + ECD_00309 0.78 -0.7
347,567 - ECD_00309 0.83 +0.5
347,567 - ECD_00309 0.83 -0.7
347,567 - ECD_00309 0.83 +0.5
347,567 - ECD_00309 0.83 +0.8

Or see this region's nucleotide sequence