Strain Fitness in Escherichia coli BL21 around ECD_00307

Experiment: N4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00306 and ECD_00307 are separated by 377 nucleotidesECD_00307 and ECD_00308 are separated by 101 nucleotidesECD_00308 and ECD_00309 are separated by 225 nucleotides ECD_00306: ECD_00306 - 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I, at 343,403 to 344,416 _00306 ECD_00307: ECD_00307 - 3-hydroxyphenylpropionic transporter, at 344,794 to 346,005 _00307 ECD_00308: ECD_00308 - DUF2058 family protein, at 346,107 to 346,646 _00308 ECD_00309: ECD_00309 - S-formylglutathione hydrolase, at 346,872 to 347,705 _00309 Position (kb) 344 345 346 347Strain fitness (log2 ratio) -2 -1 0 1at 343.826 kb on - strand, within ECD_00306at 343.888 kb on + strand, within ECD_00306at 343.888 kb on + strand, within ECD_00306at 343.892 kb on + strand, within ECD_00306at 343.892 kb on + strand, within ECD_00306at 343.892 kb on + strand, within ECD_00306at 344.165 kb on + strand, within ECD_00306at 344.327 kb on - strandat 344.374 kb on + strandat 344.444 kb on + strandat 344.444 kb on + strandat 344.699 kb on - strandat 344.726 kb on + strandat 344.752 kb on + strandat 344.752 kb on + strandat 344.793 kb on + strandat 344.958 kb on - strand, within ECD_00307at 344.962 kb on - strand, within ECD_00307at 345.031 kb on - strand, within ECD_00307at 345.226 kb on + strand, within ECD_00307at 345.227 kb on - strand, within ECD_00307at 345.287 kb on + strand, within ECD_00307at 345.287 kb on + strand, within ECD_00307at 345.416 kb on + strand, within ECD_00307at 345.464 kb on - strand, within ECD_00307at 345.487 kb on + strand, within ECD_00307at 345.632 kb on + strand, within ECD_00307at 345.652 kb on + strand, within ECD_00307at 345.652 kb on + strand, within ECD_00307at 345.652 kb on + strand, within ECD_00307at 345.665 kb on + strand, within ECD_00307at 345.665 kb on + strand, within ECD_00307at 345.665 kb on + strand, within ECD_00307at 345.702 kb on + strand, within ECD_00307at 345.702 kb on + strand, within ECD_00307at 345.708 kb on + strand, within ECD_00307at 345.709 kb on - strand, within ECD_00307at 345.709 kb on - strand, within ECD_00307at 345.787 kb on + strand, within ECD_00307at 345.849 kb on + strand, within ECD_00307at 345.850 kb on - strand, within ECD_00307at 345.984 kb on - strandat 346.013 kb on + strandat 346.014 kb on - strandat 346.016 kb on + strandat 346.046 kb on + strandat 346.123 kb on + strandat 346.150 kb on + strandat 346.241 kb on + strand, within ECD_00308at 346.274 kb on + strand, within ECD_00308at 346.311 kb on + strand, within ECD_00308at 346.313 kb on + strand, within ECD_00308at 346.313 kb on + strand, within ECD_00308at 346.334 kb on + strand, within ECD_00308at 346.445 kb on + strand, within ECD_00308at 346.488 kb on - strand, within ECD_00308at 346.500 kb on + strand, within ECD_00308at 346.556 kb on + strand, within ECD_00308at 346.558 kb on + strand, within ECD_00308at 346.558 kb on + strand, within ECD_00308at 346.645 kb on - strandat 346.650 kb on + strandat 346.650 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.654 kb on + strandat 346.655 kb on - strandat 346.655 kb on - strandat 346.868 kb on - strandat 346.880 kb on + strandat 346.908 kb on - strandat 346.937 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction N4
remove
343,826 - ECD_00306 0.42 +1.2
343,888 + ECD_00306 0.48 -0.5
343,888 + ECD_00306 0.48 -0.1
343,892 + ECD_00306 0.48 +0.6
343,892 + ECD_00306 0.48 +0.7
343,892 + ECD_00306 0.48 +0.2
344,165 + ECD_00306 0.75 +0.5
344,327 - -0.0
344,374 + +0.7
344,444 + +1.2
344,444 + +0.5
344,699 - -0.8
344,726 + +0.2
344,752 + +0.1
344,752 + +1.0
344,793 + -2.5
344,958 - ECD_00307 0.14 -0.1
344,962 - ECD_00307 0.14 +0.5
345,031 - ECD_00307 0.20 +0.6
345,226 + ECD_00307 0.36 -0.3
345,227 - ECD_00307 0.36 +0.5
345,287 + ECD_00307 0.41 +1.2
345,287 + ECD_00307 0.41 +0.0
345,416 + ECD_00307 0.51 +0.3
345,464 - ECD_00307 0.55 -0.2
345,487 + ECD_00307 0.57 +0.3
345,632 + ECD_00307 0.69 +0.3
345,652 + ECD_00307 0.71 -0.5
345,652 + ECD_00307 0.71 -0.1
345,652 + ECD_00307 0.71 +0.3
345,665 + ECD_00307 0.72 +0.5
345,665 + ECD_00307 0.72 +0.3
345,665 + ECD_00307 0.72 +0.1
345,702 + ECD_00307 0.75 +0.7
345,702 + ECD_00307 0.75 -0.4
345,708 + ECD_00307 0.75 +0.6
345,709 - ECD_00307 0.75 +0.8
345,709 - ECD_00307 0.75 +0.2
345,787 + ECD_00307 0.82 +1.3
345,849 + ECD_00307 0.87 +0.1
345,850 - ECD_00307 0.87 +0.5
345,984 - -1.5
346,013 + -0.0
346,014 - +1.7
346,016 + -0.5
346,046 + +0.3
346,123 + -0.2
346,150 + -0.5
346,241 + ECD_00308 0.25 -0.7
346,274 + ECD_00308 0.31 -0.3
346,311 + ECD_00308 0.38 -0.8
346,313 + ECD_00308 0.38 -0.3
346,313 + ECD_00308 0.38 -0.4
346,334 + ECD_00308 0.42 +0.8
346,445 + ECD_00308 0.63 -0.8
346,488 - ECD_00308 0.71 +0.0
346,500 + ECD_00308 0.73 +0.3
346,556 + ECD_00308 0.83 -0.3
346,558 + ECD_00308 0.84 -0.8
346,558 + ECD_00308 0.84 -0.2
346,645 - -0.3
346,650 + -0.4
346,650 + -0.1
346,654 + +0.9
346,654 + +1.7
346,654 + -1.1
346,654 + +0.8
346,654 + +0.5
346,654 + -0.2
346,655 - +0.0
346,655 - +0.3
346,868 - -0.2
346,880 + -0.0
346,908 - +0.3
346,937 - -0.9

Or see this region's nucleotide sequence