Strain Fitness in Escherichia coli BL21 around ECD_00289

Experiment: N4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00288 and ECD_00289 are separated by 39 nucleotidesECD_00289 and ECD_00290 are separated by 235 nucleotides ECD_00288: ECD_00288 - 2-methylcitrate dehydratase, at 320,844 to 322,295 _00288 ECD_00289: ECD_00289 - propionate--CoA ligase, at 322,335 to 324,221 _00289 ECD_00290: ECD_00290 - cytosine transporter, at 324,457 to 325,716 _00290 Position (kb) 322 323 324 325Strain fitness (log2 ratio) -2 -1 0 1 2at 321.364 kb on + strand, within ECD_00288at 321.670 kb on - strand, within ECD_00288at 321.670 kb on - strand, within ECD_00288at 321.670 kb on - strand, within ECD_00288at 321.753 kb on + strand, within ECD_00288at 321.753 kb on + strand, within ECD_00288at 321.828 kb on - strand, within ECD_00288at 321.891 kb on + strand, within ECD_00288at 321.892 kb on - strand, within ECD_00288at 322.148 kb on + strand, within ECD_00288at 322.284 kb on + strandat 322.285 kb on - strandat 322.285 kb on - strandat 322.315 kb on - strandat 322.334 kb on + strandat 322.334 kb on + strandat 322.335 kb on - strandat 322.335 kb on - strandat 322.335 kb on - strandat 322.353 kb on + strandat 322.586 kb on + strand, within ECD_00289at 322.587 kb on - strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.676 kb on + strand, within ECD_00289at 322.701 kb on - strand, within ECD_00289at 322.703 kb on + strand, within ECD_00289at 322.704 kb on - strand, within ECD_00289at 322.704 kb on - strand, within ECD_00289at 322.854 kb on + strand, within ECD_00289at 322.856 kb on + strand, within ECD_00289at 323.050 kb on - strand, within ECD_00289at 323.103 kb on + strand, within ECD_00289at 323.205 kb on + strand, within ECD_00289at 323.205 kb on + strand, within ECD_00289at 323.206 kb on - strand, within ECD_00289at 323.412 kb on + strand, within ECD_00289at 323.462 kb on + strand, within ECD_00289at 323.491 kb on - strand, within ECD_00289at 323.583 kb on + strand, within ECD_00289at 323.583 kb on + strand, within ECD_00289at 323.583 kb on + strand, within ECD_00289at 323.584 kb on - strand, within ECD_00289at 323.584 kb on - strand, within ECD_00289at 323.584 kb on - strand, within ECD_00289at 323.584 kb on - strand, within ECD_00289at 323.584 kb on - strand, within ECD_00289at 323.590 kb on - strand, within ECD_00289at 323.685 kb on - strand, within ECD_00289at 323.754 kb on + strand, within ECD_00289at 323.824 kb on + strand, within ECD_00289at 323.824 kb on + strand, within ECD_00289at 323.824 kb on + strand, within ECD_00289at 323.873 kb on + strand, within ECD_00289at 323.873 kb on + strand, within ECD_00289at 324.220 kb on - strandat 324.564 kb on + strandat 324.564 kb on + strandat 324.565 kb on - strandat 324.565 kb on - strandat 324.598 kb on - strand, within ECD_00290at 324.598 kb on - strand, within ECD_00290at 324.598 kb on - strand, within ECD_00290at 324.598 kb on - strand, within ECD_00290at 324.633 kb on + strand, within ECD_00290at 324.652 kb on + strand, within ECD_00290at 324.841 kb on - strand, within ECD_00290at 324.867 kb on - strand, within ECD_00290at 325.001 kb on + strand, within ECD_00290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction N4
remove
321,364 + ECD_00288 0.36 +0.3
321,670 - ECD_00288 0.57 +0.3
321,670 - ECD_00288 0.57 +1.0
321,670 - ECD_00288 0.57 +0.7
321,753 + ECD_00288 0.63 +0.9
321,753 + ECD_00288 0.63 -0.1
321,828 - ECD_00288 0.68 +0.2
321,891 + ECD_00288 0.72 +0.7
321,892 - ECD_00288 0.72 +0.3
322,148 + ECD_00288 0.90 +0.5
322,284 + +0.1
322,285 - +0.6
322,285 - +1.0
322,315 - +0.4
322,334 + -1.2
322,334 + +0.2
322,335 - +0.5
322,335 - -0.6
322,335 - +0.3
322,353 + -0.9
322,586 + ECD_00289 0.13 +0.1
322,587 - ECD_00289 0.13 +0.7
322,674 + ECD_00289 0.18 +0.2
322,674 + ECD_00289 0.18 -1.2
322,674 + ECD_00289 0.18 -0.0
322,674 + ECD_00289 0.18 +0.8
322,674 + ECD_00289 0.18 +0.8
322,674 + ECD_00289 0.18 -0.1
322,674 + ECD_00289 0.18 +0.5
322,675 - ECD_00289 0.18 +0.5
322,675 - ECD_00289 0.18 +0.4
322,675 - ECD_00289 0.18 -0.2
322,675 - ECD_00289 0.18 +0.2
322,675 - ECD_00289 0.18 +0.4
322,675 - ECD_00289 0.18 +0.4
322,676 + ECD_00289 0.18 -0.4
322,701 - ECD_00289 0.19 +0.7
322,703 + ECD_00289 0.20 -1.8
322,704 - ECD_00289 0.20 +0.2
322,704 - ECD_00289 0.20 -0.7
322,854 + ECD_00289 0.28 -0.4
322,856 + ECD_00289 0.28 +0.2
323,050 - ECD_00289 0.38 -0.4
323,103 + ECD_00289 0.41 +0.4
323,205 + ECD_00289 0.46 -0.0
323,205 + ECD_00289 0.46 +0.4
323,206 - ECD_00289 0.46 +0.4
323,412 + ECD_00289 0.57 +1.0
323,462 + ECD_00289 0.60 +0.5
323,491 - ECD_00289 0.61 -1.2
323,583 + ECD_00289 0.66 +0.5
323,583 + ECD_00289 0.66 -0.3
323,583 + ECD_00289 0.66 -0.6
323,584 - ECD_00289 0.66 -0.2
323,584 - ECD_00289 0.66 -1.4
323,584 - ECD_00289 0.66 +0.0
323,584 - ECD_00289 0.66 -0.5
323,584 - ECD_00289 0.66 -0.4
323,590 - ECD_00289 0.67 -0.5
323,685 - ECD_00289 0.72 -0.5
323,754 + ECD_00289 0.75 -0.5
323,824 + ECD_00289 0.79 +1.2
323,824 + ECD_00289 0.79 +1.3
323,824 + ECD_00289 0.79 +0.3
323,873 + ECD_00289 0.82 +0.4
323,873 + ECD_00289 0.82 +0.3
324,220 - -0.4
324,564 + -0.3
324,564 + -0.2
324,565 - +0.1
324,565 - -0.5
324,598 - ECD_00290 0.11 +0.5
324,598 - ECD_00290 0.11 +1.5
324,598 - ECD_00290 0.11 -0.1
324,598 - ECD_00290 0.11 +0.8
324,633 + ECD_00290 0.14 +2.5
324,652 + ECD_00290 0.15 +0.6
324,841 - ECD_00290 0.30 -0.3
324,867 - ECD_00290 0.33 -0.4
325,001 + ECD_00290 0.43 -0.1

Or see this region's nucleotide sequence