Strain Fitness in Escherichia coli BL21 around ECD_00288

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00287 and ECD_00288 are separated by 33 nucleotidesECD_00288 and ECD_00289 are separated by 39 nucleotides ECD_00287: ECD_00287 - 2-methylcitrate synthase, at 319,641 to 320,810 _00287 ECD_00288: ECD_00288 - 2-methylcitrate dehydratase, at 320,844 to 322,295 _00288 ECD_00289: ECD_00289 - propionate--CoA ligase, at 322,335 to 324,221 _00289 Position (kb) 320 321 322 323Strain fitness (log2 ratio) -3 -2 -1 0 1at 319.876 kb on - strand, within ECD_00287at 320.021 kb on + strand, within ECD_00287at 320.021 kb on + strand, within ECD_00287at 320.086 kb on - strand, within ECD_00287at 320.098 kb on - strand, within ECD_00287at 320.214 kb on - strand, within ECD_00287at 320.214 kb on - strand, within ECD_00287at 320.230 kb on - strand, within ECD_00287at 320.294 kb on + strand, within ECD_00287at 320.294 kb on + strand, within ECD_00287at 320.294 kb on + strand, within ECD_00287at 320.298 kb on + strand, within ECD_00287at 320.298 kb on + strand, within ECD_00287at 320.299 kb on - strand, within ECD_00287at 320.443 kb on + strand, within ECD_00287at 320.444 kb on - strand, within ECD_00287at 320.444 kb on - strand, within ECD_00287at 320.472 kb on - strand, within ECD_00287at 320.550 kb on + strand, within ECD_00287at 320.550 kb on + strand, within ECD_00287at 320.551 kb on - strand, within ECD_00287at 320.760 kb on + strandat 320.761 kb on - strandat 320.829 kb on - strandat 320.933 kb on + strandat 321.113 kb on + strand, within ECD_00288at 321.113 kb on + strand, within ECD_00288at 321.364 kb on + strand, within ECD_00288at 321.670 kb on - strand, within ECD_00288at 321.670 kb on - strand, within ECD_00288at 321.670 kb on - strand, within ECD_00288at 321.753 kb on + strand, within ECD_00288at 321.753 kb on + strand, within ECD_00288at 321.828 kb on - strand, within ECD_00288at 321.891 kb on + strand, within ECD_00288at 321.892 kb on - strand, within ECD_00288at 322.148 kb on + strand, within ECD_00288at 322.284 kb on + strandat 322.285 kb on - strandat 322.285 kb on - strandat 322.315 kb on - strandat 322.334 kb on + strandat 322.334 kb on + strandat 322.335 kb on - strandat 322.335 kb on - strandat 322.335 kb on - strandat 322.353 kb on + strandat 322.586 kb on + strand, within ECD_00289at 322.587 kb on - strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.676 kb on + strand, within ECD_00289at 322.701 kb on - strand, within ECD_00289at 322.703 kb on + strand, within ECD_00289at 322.704 kb on - strand, within ECD_00289at 322.704 kb on - strand, within ECD_00289at 322.854 kb on + strand, within ECD_00289at 322.856 kb on + strand, within ECD_00289at 323.050 kb on - strand, within ECD_00289at 323.103 kb on + strand, within ECD_00289at 323.205 kb on + strand, within ECD_00289at 323.205 kb on + strand, within ECD_00289at 323.206 kb on - strand, within ECD_00289

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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319,876 - ECD_00287 0.20 -1.5
320,021 + ECD_00287 0.32 -0.4
320,021 + ECD_00287 0.32 +0.3
320,086 - ECD_00287 0.38 -0.0
320,098 - ECD_00287 0.39 -1.1
320,214 - ECD_00287 0.49 -0.1
320,214 - ECD_00287 0.49 -0.6
320,230 - ECD_00287 0.50 +0.5
320,294 + ECD_00287 0.56 -0.3
320,294 + ECD_00287 0.56 +0.1
320,294 + ECD_00287 0.56 -0.4
320,298 + ECD_00287 0.56 +0.4
320,298 + ECD_00287 0.56 +0.3
320,299 - ECD_00287 0.56 +0.2
320,443 + ECD_00287 0.69 +0.3
320,444 - ECD_00287 0.69 -2.2
320,444 - ECD_00287 0.69 +0.8
320,472 - ECD_00287 0.71 +1.0
320,550 + ECD_00287 0.78 -0.8
320,550 + ECD_00287 0.78 +0.2
320,551 - ECD_00287 0.78 +0.3
320,760 + +0.1
320,761 - +0.5
320,829 - -3.1
320,933 + -0.2
321,113 + ECD_00288 0.19 +0.7
321,113 + ECD_00288 0.19 +1.2
321,364 + ECD_00288 0.36 +0.3
321,670 - ECD_00288 0.57 +0.3
321,670 - ECD_00288 0.57 +1.0
321,670 - ECD_00288 0.57 +0.7
321,753 + ECD_00288 0.63 +0.9
321,753 + ECD_00288 0.63 -0.1
321,828 - ECD_00288 0.68 +0.2
321,891 + ECD_00288 0.72 +0.7
321,892 - ECD_00288 0.72 +0.2
322,148 + ECD_00288 0.90 +0.5
322,284 + +0.1
322,285 - +0.6
322,285 - +1.0
322,315 - +0.4
322,334 + -1.2
322,334 + +0.2
322,335 - +0.5
322,335 - -0.6
322,335 - +0.3
322,353 + -0.9
322,586 + ECD_00289 0.13 +0.1
322,587 - ECD_00289 0.13 +0.7
322,674 + ECD_00289 0.18 +0.2
322,674 + ECD_00289 0.18 -1.2
322,674 + ECD_00289 0.18 -0.0
322,674 + ECD_00289 0.18 +0.8
322,674 + ECD_00289 0.18 +0.7
322,674 + ECD_00289 0.18 -0.1
322,674 + ECD_00289 0.18 +0.5
322,675 - ECD_00289 0.18 +0.5
322,675 - ECD_00289 0.18 +0.4
322,675 - ECD_00289 0.18 -0.2
322,675 - ECD_00289 0.18 +0.2
322,675 - ECD_00289 0.18 +0.4
322,675 - ECD_00289 0.18 +0.4
322,676 + ECD_00289 0.18 -0.4
322,701 - ECD_00289 0.19 +0.7
322,703 + ECD_00289 0.20 -1.8
322,704 - ECD_00289 0.20 +0.2
322,704 - ECD_00289 0.20 -0.7
322,854 + ECD_00289 0.28 -0.4
322,856 + ECD_00289 0.28 +0.2
323,050 - ECD_00289 0.38 -0.4
323,103 + ECD_00289 0.41 +0.4
323,205 + ECD_00289 0.46 -0.0
323,205 + ECD_00289 0.46 +0.4
323,206 - ECD_00289 0.46 +0.4

Or see this region's nucleotide sequence