Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00256 and ECD_00257 are separated by 139 nucleotides ECD_00257 and ECD_00258 are separated by 590 nucleotides
ECD_00256: ECD_00256 - attaching and effacing protein, pathogenesis factor, at 284,540 to 285,772
_00256
ECD_00257: ECD_00257 - putative DNA-binding transcriptional regulator, at 285,912 to 286,763
_00257
ECD_00258: ECD_00258 - reactive chlorine species (RCS) stress resistance inner membrane protein, at 287,354 to 287,947
_00258
Position (kb) 285
286
287 Strain fitness (log2 ratio) -1
0
1 at 285.311 kb on + strand, within ECD_00256 at 285.311 kb on + strand, within ECD_00256 at 285.311 kb on + strand, within ECD_00256 at 285.312 kb on - strand, within ECD_00256 at 285.320 kb on + strand, within ECD_00256 at 285.321 kb on - strand, within ECD_00256 at 285.323 kb on + strand, within ECD_00256 at 285.355 kb on + strand, within ECD_00256 at 285.379 kb on + strand, within ECD_00256 at 285.398 kb on + strand, within ECD_00256 at 285.398 kb on + strand, within ECD_00256 at 285.488 kb on + strand, within ECD_00256 at 285.532 kb on + strand, within ECD_00256 at 285.532 kb on + strand, within ECD_00256 at 285.532 kb on + strand, within ECD_00256 at 285.532 kb on + strand, within ECD_00256 at 285.532 kb on + strand, within ECD_00256 at 285.533 kb on - strand, within ECD_00256 at 285.533 kb on - strand, within ECD_00256 at 285.533 kb on - strand, within ECD_00256 at 285.631 kb on + strand, within ECD_00256 at 285.659 kb on + strand at 285.661 kb on + strand at 285.770 kb on + strand at 286.039 kb on - strand, within ECD_00257 at 286.111 kb on + strand, within ECD_00257 at 286.284 kb on + strand, within ECD_00257 at 286.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 285,311 + ECD_00256 0.63 +0.2 285,311 + ECD_00256 0.63 +0.0 285,311 + ECD_00256 0.63 -0.5 285,312 - ECD_00256 0.63 +0.4 285,320 + ECD_00256 0.63 -0.2 285,321 - ECD_00256 0.63 +0.4 285,323 + ECD_00256 0.64 +0.0 285,355 + ECD_00256 0.66 +0.4 285,379 + ECD_00256 0.68 -1.5 285,398 + ECD_00256 0.70 -0.5 285,398 + ECD_00256 0.70 +0.3 285,488 + ECD_00256 0.77 -0.6 285,532 + ECD_00256 0.80 -0.3 285,532 + ECD_00256 0.80 +1.1 285,532 + ECD_00256 0.80 -0.3 285,532 + ECD_00256 0.80 +0.7 285,532 + ECD_00256 0.80 +0.5 285,533 - ECD_00256 0.81 +0.2 285,533 - ECD_00256 0.81 -1.7 285,533 - ECD_00256 0.81 -1.1 285,631 + ECD_00256 0.88 -0.5 285,659 + -0.2 285,661 + -0.6 285,770 + -0.3 286,039 - ECD_00257 0.15 -0.6 286,111 + ECD_00257 0.23 -0.1 286,284 + ECD_00257 0.44 -1.0 286,889 - -0.2
Or see this region's nucleotide sequence