Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00156 and ECD_00157 are separated by 37 nucleotides ECD_00157 and ECD_00158 overlap by 8 nucleotides ECD_00158 and ECD_00159 are separated by 83 nucleotides
ECD_00156: ECD_00156 - UPF0126 family inner membrane protein, at 179,844 to 180,467
_00156
ECD_00157: ECD_00157 - vitamin B12 ABC transporter periplasmic binding protein, at 180,505 to 181,305
_00157
ECD_00158: ECD_00158 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 181,298 to 181,996
_00158
ECD_00159: ECD_00159 - deoxyguanosine triphosphate triphosphohydrolase, at 182,080 to 183,597
_00159
Position (kb) 181
182 Strain fitness (log2 ratio) -1
0
1 at 180.301 kb on - strand, within ECD_00156 at 180.345 kb on + strand, within ECD_00156 at 180.445 kb on - strand at 180.511 kb on + strand at 180.512 kb on - strand at 180.512 kb on - strand at 180.529 kb on - strand at 180.552 kb on + strand at 180.555 kb on + strand at 180.556 kb on - strand at 180.556 kb on - strand at 180.692 kb on - strand, within ECD_00157 at 180.857 kb on + strand, within ECD_00157 at 180.950 kb on - strand, within ECD_00157 at 181.042 kb on - strand, within ECD_00157 at 181.042 kb on - strand, within ECD_00157 at 181.299 kb on + strand at 181.299 kb on + strand at 181.300 kb on - strand at 182.315 kb on - strand, within ECD_00159 at 182.315 kb on - strand, within ECD_00159 at 182.352 kb on + strand, within ECD_00159 at 182.474 kb on + strand, within ECD_00159 at 182.559 kb on - strand, within ECD_00159 at 182.559 kb on - strand, within ECD_00159 at 182.618 kb on + strand, within ECD_00159 at 182.618 kb on + strand, within ECD_00159 at 182.618 kb on + strand, within ECD_00159 at 182.618 kb on + strand, within ECD_00159 at 182.618 kb on + strand, within ECD_00159 at 182.619 kb on - strand, within ECD_00159 at 182.619 kb on - strand, within ECD_00159 at 182.619 kb on - strand, within ECD_00159 at 182.619 kb on - strand, within ECD_00159 at 182.661 kb on + strand, within ECD_00159 at 182.661 kb on + strand, within ECD_00159 at 182.661 kb on + strand, within ECD_00159 at 182.662 kb on - strand, within ECD_00159 at 182.662 kb on - strand, within ECD_00159 at 182.662 kb on - strand, within ECD_00159 at 182.662 kb on - strand, within ECD_00159 at 182.662 kb on - strand, within ECD_00159 at 182.762 kb on - strand, within ECD_00159 at 182.766 kb on - strand, within ECD_00159 at 182.804 kb on - strand, within ECD_00159 at 182.894 kb on - strand, within ECD_00159
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 180,301 - ECD_00156 0.73 -0.5 180,345 + ECD_00156 0.80 +0.3 180,445 - +0.3 180,511 + +0.2 180,512 - +0.4 180,512 - -0.4 180,529 - +0.2 180,552 + -0.2 180,555 + +0.3 180,556 - -0.5 180,556 - +0.5 180,692 - ECD_00157 0.23 -0.7 180,857 + ECD_00157 0.44 +0.6 180,950 - ECD_00157 0.56 +0.9 181,042 - ECD_00157 0.67 +0.2 181,042 - ECD_00157 0.67 +0.6 181,299 + +0.1 181,299 + +0.1 181,300 - +0.3 182,315 - ECD_00159 0.15 -0.8 182,315 - ECD_00159 0.15 -0.1 182,352 + ECD_00159 0.18 -0.5 182,474 + ECD_00159 0.26 -0.5 182,559 - ECD_00159 0.32 +0.6 182,559 - ECD_00159 0.32 +0.6 182,618 + ECD_00159 0.35 +0.1 182,618 + ECD_00159 0.35 +0.2 182,618 + ECD_00159 0.35 +0.3 182,618 + ECD_00159 0.35 -0.1 182,618 + ECD_00159 0.35 +0.8 182,619 - ECD_00159 0.36 -1.0 182,619 - ECD_00159 0.36 -0.8 182,619 - ECD_00159 0.36 +0.5 182,619 - ECD_00159 0.36 -0.9 182,661 + ECD_00159 0.38 -0.2 182,661 + ECD_00159 0.38 -0.8 182,661 + ECD_00159 0.38 -0.1 182,662 - ECD_00159 0.38 -0.2 182,662 - ECD_00159 0.38 +0.8 182,662 - ECD_00159 0.38 -0.2 182,662 - ECD_00159 0.38 -0.2 182,662 - ECD_00159 0.38 +1.1 182,762 - ECD_00159 0.45 -0.8 182,766 - ECD_00159 0.45 +0.3 182,804 - ECD_00159 0.48 -0.5 182,894 - ECD_00159 0.54 +0.2
Or see this region's nucleotide sequence