Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00115 and ECD_00116 are separated by 70 nucleotides ECD_00116 and ECD_00117 are separated by 354 nucleotides
ECD_00115: ECD_00115 - dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase, at 130,717 to 132,141
_00115
ECD_00116: ECD_00116 - DUF3300 family protein, at 132,212 to 134,065
_00116
ECD_00117: ECD_00117 - aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase, at 134,420 to 137,017
_00117
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -1
0
1
2 at 132.140 kb on - strand at 132.170 kb on + strand at 132.170 kb on + strand at 132.293 kb on - strand at 132.298 kb on + strand at 132.739 kb on - strand, within ECD_00116 at 132.748 kb on - strand, within ECD_00116 at 132.763 kb on + strand, within ECD_00116 at 132.951 kb on + strand, within ECD_00116 at 132.970 kb on - strand, within ECD_00116 at 132.970 kb on - strand, within ECD_00116 at 132.995 kb on - strand, within ECD_00116 at 133.006 kb on + strand, within ECD_00116 at 133.006 kb on + strand, within ECD_00116 at 133.113 kb on + strand, within ECD_00116 at 133.113 kb on + strand, within ECD_00116 at 133.114 kb on - strand, within ECD_00116 at 133.175 kb on + strand, within ECD_00116 at 133.175 kb on + strand, within ECD_00116 at 133.183 kb on - strand, within ECD_00116 at 133.204 kb on + strand, within ECD_00116 at 133.205 kb on - strand, within ECD_00116 at 133.205 kb on - strand, within ECD_00116 at 133.264 kb on - strand, within ECD_00116 at 133.318 kb on - strand, within ECD_00116 at 133.329 kb on + strand, within ECD_00116 at 133.329 kb on + strand, within ECD_00116 at 133.412 kb on - strand, within ECD_00116 at 133.474 kb on + strand, within ECD_00116 at 133.541 kb on + strand, within ECD_00116 at 133.542 kb on - strand, within ECD_00116 at 133.721 kb on - strand, within ECD_00116 at 133.791 kb on - strand, within ECD_00116 at 133.833 kb on - strand, within ECD_00116 at 133.907 kb on - strand at 133.980 kb on - strand at 133.980 kb on - strand at 133.981 kb on + strand at 133.981 kb on + strand at 133.986 kb on - strand at 134.133 kb on + strand at 134.134 kb on - strand at 134.134 kb on - strand at 134.134 kb on - strand at 134.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 132,140 - -0.4 132,170 + -0.5 132,170 + -0.5 132,293 - -1.2 132,298 + +0.5 132,739 - ECD_00116 0.28 +0.9 132,748 - ECD_00116 0.29 -0.7 132,763 + ECD_00116 0.30 +0.0 132,951 + ECD_00116 0.40 +1.0 132,970 - ECD_00116 0.41 -0.2 132,970 - ECD_00116 0.41 +0.1 132,995 - ECD_00116 0.42 +0.1 133,006 + ECD_00116 0.43 -0.7 133,006 + ECD_00116 0.43 +0.6 133,113 + ECD_00116 0.49 +0.3 133,113 + ECD_00116 0.49 +0.2 133,114 - ECD_00116 0.49 +0.1 133,175 + ECD_00116 0.52 -0.9 133,175 + ECD_00116 0.52 +0.8 133,183 - ECD_00116 0.52 +0.1 133,204 + ECD_00116 0.54 +0.6 133,205 - ECD_00116 0.54 +0.4 133,205 - ECD_00116 0.54 +0.4 133,264 - ECD_00116 0.57 -0.2 133,318 - ECD_00116 0.60 -0.7 133,329 + ECD_00116 0.60 +0.4 133,329 + ECD_00116 0.60 -1.2 133,412 - ECD_00116 0.65 +0.0 133,474 + ECD_00116 0.68 +1.3 133,541 + ECD_00116 0.72 +0.3 133,542 - ECD_00116 0.72 -0.7 133,721 - ECD_00116 0.81 -0.0 133,791 - ECD_00116 0.85 +0.8 133,833 - ECD_00116 0.87 +0.9 133,907 - -0.4 133,980 - +1.0 133,980 - +0.2 133,981 + +1.5 133,981 + +0.0 133,986 - +0.2 134,133 + +0.5 134,134 - +0.8 134,134 - +0.1 134,134 - -1.6 134,235 + +1.8
Or see this region's nucleotide sequence