Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00062 and ECD_00063 are separated by 74 nucleotides ECD_00063 and ECD_00064 are separated by 284 nucleotides
ECD_00062: ECD_00062 - DNA polymerase II, at 66,234 to 68,585
_00062
ECD_00063: ECD_00063 - L-ribulose-5-phosphate 4-epimerase, at 68,660 to 69,355
_00063
ECD_00064: ECD_00064 - L-arabinose isomerase, at 69,640 to 71,142
_00064
Position (kb) 68
69
70 Strain fitness (log2 ratio) -2
-1
0
1 at 67.942 kb on + strand, within ECD_00062 at 67.942 kb on + strand, within ECD_00062 at 67.942 kb on + strand, within ECD_00062 at 67.975 kb on - strand, within ECD_00062 at 67.996 kb on + strand, within ECD_00062 at 67.996 kb on + strand, within ECD_00062 at 67.997 kb on - strand, within ECD_00062 at 68.048 kb on + strand, within ECD_00062 at 68.048 kb on + strand, within ECD_00062 at 68.049 kb on - strand, within ECD_00062 at 68.049 kb on - strand, within ECD_00062 at 68.050 kb on + strand, within ECD_00062 at 68.050 kb on + strand, within ECD_00062 at 68.050 kb on + strand, within ECD_00062 at 68.124 kb on - strand, within ECD_00062 at 68.198 kb on + strand, within ECD_00062 at 68.245 kb on + strand, within ECD_00062 at 68.276 kb on - strand, within ECD_00062 at 68.312 kb on - strand, within ECD_00062 at 68.420 kb on + strand at 68.591 kb on - strand at 68.617 kb on + strand at 68.673 kb on + strand at 68.692 kb on + strand at 68.700 kb on + strand at 68.700 kb on + strand at 68.701 kb on - strand at 68.770 kb on + strand, within ECD_00063 at 68.771 kb on - strand, within ECD_00063 at 68.772 kb on + strand, within ECD_00063 at 68.772 kb on + strand, within ECD_00063 at 68.772 kb on + strand, within ECD_00063 at 68.772 kb on + strand, within ECD_00063 at 68.772 kb on + strand, within ECD_00063 at 68.772 kb on + strand, within ECD_00063 at 68.773 kb on - strand, within ECD_00063 at 68.934 kb on + strand, within ECD_00063 at 69.049 kb on + strand, within ECD_00063 at 69.213 kb on + strand, within ECD_00063 at 69.298 kb on + strand at 69.326 kb on + strand at 69.326 kb on + strand at 69.422 kb on + strand at 69.508 kb on - strand at 69.592 kb on + strand at 69.637 kb on + strand at 69.638 kb on - strand at 69.922 kb on - strand, within ECD_00064 at 70.017 kb on + strand, within ECD_00064 at 70.117 kb on - strand, within ECD_00064 at 70.117 kb on - strand, within ECD_00064 at 70.133 kb on + strand, within ECD_00064 at 70.133 kb on + strand, within ECD_00064 at 70.133 kb on + strand, within ECD_00064 at 70.133 kb on + strand, within ECD_00064 at 70.133 kb on + strand, within ECD_00064 at 70.134 kb on - strand, within ECD_00064 at 70.139 kb on + strand, within ECD_00064 at 70.139 kb on + strand, within ECD_00064 at 70.140 kb on - strand, within ECD_00064 at 70.140 kb on - strand, within ECD_00064 at 70.140 kb on - strand, within ECD_00064 at 70.149 kb on + strand, within ECD_00064 at 70.265 kb on - strand, within ECD_00064
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 67,942 + ECD_00062 0.73 -1.0 67,942 + ECD_00062 0.73 +0.6 67,942 + ECD_00062 0.73 -0.1 67,975 - ECD_00062 0.74 +0.6 67,996 + ECD_00062 0.75 -0.0 67,996 + ECD_00062 0.75 -0.8 67,997 - ECD_00062 0.75 -0.4 68,048 + ECD_00062 0.77 +0.1 68,048 + ECD_00062 0.77 +1.2 68,049 - ECD_00062 0.77 -0.4 68,049 - ECD_00062 0.77 +1.2 68,050 + ECD_00062 0.77 -0.3 68,050 + ECD_00062 0.77 +0.6 68,050 + ECD_00062 0.77 -1.4 68,124 - ECD_00062 0.80 +0.3 68,198 + ECD_00062 0.84 +0.2 68,245 + ECD_00062 0.86 +1.1 68,276 - ECD_00062 0.87 +0.4 68,312 - ECD_00062 0.88 +0.6 68,420 + -0.4 68,591 - -0.4 68,617 + +0.3 68,673 + -1.4 68,692 + -0.7 68,700 + +0.2 68,700 + -0.6 68,701 - +0.1 68,770 + ECD_00063 0.16 -0.7 68,771 - ECD_00063 0.16 -0.2 68,772 + ECD_00063 0.16 -0.2 68,772 + ECD_00063 0.16 +0.3 68,772 + ECD_00063 0.16 -0.7 68,772 + ECD_00063 0.16 +0.1 68,772 + ECD_00063 0.16 -0.3 68,772 + ECD_00063 0.16 +0.7 68,773 - ECD_00063 0.16 -0.8 68,934 + ECD_00063 0.39 -2.5 69,049 + ECD_00063 0.56 -0.2 69,213 + ECD_00063 0.79 +0.5 69,298 + +0.4 69,326 + -0.2 69,326 + -0.1 69,422 + -1.2 69,508 - +0.1 69,592 + -0.3 69,637 + -2.7 69,638 - -0.4 69,922 - ECD_00064 0.19 +0.4 70,017 + ECD_00064 0.25 -0.4 70,117 - ECD_00064 0.32 +0.0 70,117 - ECD_00064 0.32 +0.1 70,133 + ECD_00064 0.33 -0.2 70,133 + ECD_00064 0.33 -0.1 70,133 + ECD_00064 0.33 +0.3 70,133 + ECD_00064 0.33 +0.1 70,133 + ECD_00064 0.33 -0.0 70,134 - ECD_00064 0.33 +1.4 70,139 + ECD_00064 0.33 -2.0 70,139 + ECD_00064 0.33 -0.3 70,140 - ECD_00064 0.33 -0.3 70,140 - ECD_00064 0.33 +0.3 70,140 - ECD_00064 0.33 +0.1 70,149 + ECD_00064 0.34 +0.7 70,265 - ECD_00064 0.42 +0.2
Or see this region's nucleotide sequence