Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04242 and ECD_04243 overlap by 43 nucleotides ECD_04243 and ECD_04244 are separated by 37 nucleotides ECD_04244 and ECD_04245 are separated by 140 nucleotides ECD_04245 and ECD_t00084 are separated by 38 nucleotides ECD_t00084 and ECD_t00085 are separated by 34 nucleotides ECD_t00085 and ECD_t00086 are separated by 28 nucleotides
ECD_04242: ECD_04242 - putative transcriptional regulator, at 4,521,852 to 4,522,577
_04242
ECD_04243: ECD_04243 - bgl operon transcriptional activator, at 4,522,535 to 4,523,212
_04243
ECD_04244: ECD_04244 - ferric iron reductase involved in ferric hydroximate transport, at 4,523,250 to 4,524,038
_04244
ECD_04245: ECD_04245 - uncharacterized protein, at 4,524,179 to 4,524,415
_04245
ECD_t00084: ECD_t00084 - tRNA-Leu, at 4,524,454 to 4,524,540
_t00084
ECD_t00085: ECD_t00085 - tRNA-Leu, at 4,524,575 to 4,524,661
_t00085
ECD_t00086: ECD_t00086 - tRNA-Leu, at 4,524,690 to 4,524,776
_t00086
Position (kb)
4523
4524
4525 Strain fitness (log2 ratio)
-1
0
1
2 at 4522.334 kb on - strand, within ECD_04242 at 4522.334 kb on - strand, within ECD_04242 at 4522.346 kb on - strand, within ECD_04242 at 4522.372 kb on + strand, within ECD_04242 at 4522.373 kb on - strand, within ECD_04242 at 4522.464 kb on + strand, within ECD_04242 at 4522.465 kb on - strand, within ECD_04242 at 4522.474 kb on + strand, within ECD_04242 at 4522.553 kb on - strand at 4522.594 kb on + strand at 4522.595 kb on - strand at 4522.598 kb on - strand at 4522.642 kb on + strand, within ECD_04243 at 4522.655 kb on + strand, within ECD_04243 at 4522.655 kb on + strand, within ECD_04243 at 4522.655 kb on + strand, within ECD_04243 at 4522.803 kb on + strand, within ECD_04243 at 4522.803 kb on + strand, within ECD_04243 at 4522.807 kb on + strand, within ECD_04243 at 4522.876 kb on - strand, within ECD_04243 at 4522.876 kb on - strand, within ECD_04243 at 4522.926 kb on + strand, within ECD_04243 at 4522.935 kb on + strand, within ECD_04243 at 4522.935 kb on + strand, within ECD_04243 at 4522.935 kb on + strand, within ECD_04243 at 4522.935 kb on + strand, within ECD_04243 at 4522.970 kb on + strand, within ECD_04243 at 4522.971 kb on - strand, within ECD_04243 at 4522.971 kb on - strand, within ECD_04243 at 4523.023 kb on + strand, within ECD_04243 at 4523.023 kb on + strand, within ECD_04243 at 4523.158 kb on + strand at 4523.166 kb on + strand at 4523.166 kb on + strand at 4523.167 kb on - strand at 4523.167 kb on - strand at 4523.170 kb on + strand at 4523.170 kb on + strand at 4523.171 kb on - strand at 4523.191 kb on + strand at 4523.192 kb on - strand at 4523.341 kb on - strand, within ECD_04244 at 4523.363 kb on + strand, within ECD_04244 at 4523.364 kb on - strand, within ECD_04244 at 4523.458 kb on + strand, within ECD_04244 at 4523.458 kb on + strand, within ECD_04244 at 4523.492 kb on + strand, within ECD_04244 at 4523.493 kb on - strand, within ECD_04244 at 4523.523 kb on + strand, within ECD_04244 at 4523.685 kb on + strand, within ECD_04244 at 4523.685 kb on + strand, within ECD_04244 at 4523.685 kb on + strand, within ECD_04244 at 4523.686 kb on - strand, within ECD_04244 at 4523.686 kb on - strand, within ECD_04244 at 4523.686 kb on - strand, within ECD_04244 at 4523.686 kb on - strand, within ECD_04244 at 4523.743 kb on + strand, within ECD_04244 at 4523.744 kb on - strand, within ECD_04244 at 4523.744 kb on - strand, within ECD_04244 at 4523.744 kb on - strand, within ECD_04244 at 4523.744 kb on - strand, within ECD_04244 at 4523.744 kb on - strand, within ECD_04244 at 4523.744 kb on - strand, within ECD_04244 at 4523.807 kb on - strand, within ECD_04244 at 4523.810 kb on + strand, within ECD_04244 at 4523.810 kb on + strand, within ECD_04244 at 4523.810 kb on + strand, within ECD_04244 at 4523.811 kb on - strand, within ECD_04244 at 4523.811 kb on - strand, within ECD_04244 at 4523.811 kb on - strand, within ECD_04244 at 4523.811 kb on - strand, within ECD_04244 at 4523.811 kb on - strand, within ECD_04244 at 4523.821 kb on + strand, within ECD_04244 at 4523.841 kb on + strand, within ECD_04244 at 4523.841 kb on + strand, within ECD_04244 at 4523.842 kb on - strand, within ECD_04244 at 4523.882 kb on + strand, within ECD_04244 at 4524.013 kb on + strand at 4524.090 kb on + strand at 4524.190 kb on + strand at 4524.190 kb on + strand at 4524.190 kb on + strand at 4524.259 kb on - strand, within ECD_04245 at 4524.301 kb on - strand, within ECD_04245 at 4524.301 kb on - strand, within ECD_04245 at 4524.341 kb on + strand, within ECD_04245 at 4524.342 kb on - strand, within ECD_04245 at 4524.342 kb on - strand, within ECD_04245 at 4524.370 kb on + strand, within ECD_04245 at 4524.371 kb on - strand, within ECD_04245 at 4524.371 kb on - strand, within ECD_04245 at 4524.445 kb on - strand at 4524.445 kb on - strand at 4524.552 kb on - strand at 4524.620 kb on - strand, within ECD_t00085 at 4524.620 kb on - strand, within ECD_t00085 at 4524.620 kb on - strand, within ECD_t00085 at 4524.676 kb on - strand at 4524.805 kb on - strand at 4524.846 kb on + strand at 4524.846 kb on + strand at 4524.850 kb on + strand at 4524.850 kb on + strand at 4524.851 kb on - strand at 4524.869 kb on - strand at 4524.914 kb on + strand at 4524.914 kb on + strand at 4524.957 kb on + strand at 4524.966 kb on + strand at 4524.967 kb on - strand at 4525.001 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 4,522,334 - ECD_04242 0.66 +0.3 4,522,334 - ECD_04242 0.66 +0.3 4,522,346 - ECD_04242 0.68 -0.4 4,522,372 + ECD_04242 0.72 +0.7 4,522,373 - ECD_04242 0.72 -0.1 4,522,464 + ECD_04242 0.84 +1.6 4,522,465 - ECD_04242 0.84 +0.9 4,522,474 + ECD_04242 0.86 -0.4 4,522,553 - +0.8 4,522,594 + -0.6 4,522,595 - +1.5 4,522,598 - -0.8 4,522,642 + ECD_04243 0.16 +0.1 4,522,655 + ECD_04243 0.18 +0.3 4,522,655 + ECD_04243 0.18 +0.4 4,522,655 + ECD_04243 0.18 -0.1 4,522,803 + ECD_04243 0.40 +0.7 4,522,803 + ECD_04243 0.40 +0.1 4,522,807 + ECD_04243 0.40 +0.6 4,522,876 - ECD_04243 0.50 -0.1 4,522,876 - ECD_04243 0.50 -0.2 4,522,926 + ECD_04243 0.58 +0.3 4,522,935 + ECD_04243 0.59 +0.8 4,522,935 + ECD_04243 0.59 -0.1 4,522,935 + ECD_04243 0.59 +0.8 4,522,935 + ECD_04243 0.59 +0.8 4,522,970 + ECD_04243 0.64 +0.4 4,522,971 - ECD_04243 0.64 +0.5 4,522,971 - ECD_04243 0.64 -0.2 4,523,023 + ECD_04243 0.72 -0.1 4,523,023 + ECD_04243 0.72 +0.5 4,523,158 + +1.0 4,523,166 + -0.2 4,523,166 + +0.3 4,523,167 - +0.3 4,523,167 - +0.3 4,523,170 + +0.0 4,523,170 + +0.5 4,523,171 - +0.5 4,523,191 + +0.8 4,523,192 - +0.0 4,523,341 - ECD_04244 0.12 +1.2 4,523,363 + ECD_04244 0.14 +0.4 4,523,364 - ECD_04244 0.14 -0.3 4,523,458 + ECD_04244 0.26 +0.2 4,523,458 + ECD_04244 0.26 -0.2 4,523,492 + ECD_04244 0.31 +0.6 4,523,493 - ECD_04244 0.31 -0.2 4,523,523 + ECD_04244 0.35 +2.1 4,523,685 + ECD_04244 0.55 +0.2 4,523,685 + ECD_04244 0.55 -0.3 4,523,685 + ECD_04244 0.55 -0.2 4,523,686 - ECD_04244 0.55 +0.8 4,523,686 - ECD_04244 0.55 +1.2 4,523,686 - ECD_04244 0.55 +0.3 4,523,686 - ECD_04244 0.55 +0.9 4,523,743 + ECD_04244 0.62 +1.0 4,523,744 - ECD_04244 0.63 +0.6 4,523,744 - ECD_04244 0.63 +0.8 4,523,744 - ECD_04244 0.63 +0.0 4,523,744 - ECD_04244 0.63 -0.0 4,523,744 - ECD_04244 0.63 +0.2 4,523,744 - ECD_04244 0.63 -0.1 4,523,807 - ECD_04244 0.71 +0.6 4,523,810 + ECD_04244 0.71 +0.7 4,523,810 + ECD_04244 0.71 +0.5 4,523,810 + ECD_04244 0.71 +0.8 4,523,811 - ECD_04244 0.71 +0.1 4,523,811 - ECD_04244 0.71 -1.4 4,523,811 - ECD_04244 0.71 +0.3 4,523,811 - ECD_04244 0.71 +0.7 4,523,811 - ECD_04244 0.71 +0.4 4,523,821 + ECD_04244 0.72 -0.2 4,523,841 + ECD_04244 0.75 +0.8 4,523,841 + ECD_04244 0.75 +0.5 4,523,842 - ECD_04244 0.75 +0.3 4,523,882 + ECD_04244 0.80 -0.5 4,524,013 + +0.3 4,524,090 + +0.3 4,524,190 + +0.0 4,524,190 + +0.3 4,524,190 + +0.7 4,524,259 - ECD_04245 0.34 +1.0 4,524,301 - ECD_04245 0.51 -0.1 4,524,301 - ECD_04245 0.51 +0.1 4,524,341 + ECD_04245 0.68 -0.6 4,524,342 - ECD_04245 0.69 -0.1 4,524,342 - ECD_04245 0.69 +0.7 4,524,370 + ECD_04245 0.81 +0.6 4,524,371 - ECD_04245 0.81 +0.6 4,524,371 - ECD_04245 0.81 -0.3 4,524,445 - +0.4 4,524,445 - -0.6 4,524,552 - +0.0 4,524,620 - ECD_t00085 0.52 +0.8 4,524,620 - ECD_t00085 0.52 +0.3 4,524,620 - ECD_t00085 0.52 +0.6 4,524,676 - +0.0 4,524,805 - -0.4 4,524,846 + -0.3 4,524,846 + -0.5 4,524,850 + +0.6 4,524,850 + +0.1 4,524,851 - +0.1 4,524,869 - +0.7 4,524,914 + -0.6 4,524,914 + +0.1 4,524,957 + +1.3 4,524,966 + -0.3 4,524,967 - +0.5 4,525,001 + +0.8
Or see this region's nucleotide sequence