Strain Fitness in Escherichia coli BL21 around ECD_04243

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04242 and ECD_04243 overlap by 43 nucleotidesECD_04243 and ECD_04244 are separated by 37 nucleotidesECD_04244 and ECD_04245 are separated by 140 nucleotides ECD_04242: ECD_04242 - putative transcriptional regulator, at 4,521,852 to 4,522,577 _04242 ECD_04243: ECD_04243 - bgl operon transcriptional activator, at 4,522,535 to 4,523,212 _04243 ECD_04244: ECD_04244 - ferric iron reductase involved in ferric hydroximate transport, at 4,523,250 to 4,524,038 _04244 ECD_04245: ECD_04245 - uncharacterized protein, at 4,524,179 to 4,524,415 _04245 Position (kb) 4522 4523 4524Strain fitness (log2 ratio) -1 0 1 2at 4522.069 kb on - strand, within ECD_04242at 4522.144 kb on + strand, within ECD_04242at 4522.174 kb on + strand, within ECD_04242at 4522.216 kb on + strand, within ECD_04242at 4522.217 kb on - strand, within ECD_04242at 4522.334 kb on - strand, within ECD_04242at 4522.334 kb on - strand, within ECD_04242at 4522.346 kb on - strand, within ECD_04242at 4522.372 kb on + strand, within ECD_04242at 4522.373 kb on - strand, within ECD_04242at 4522.464 kb on + strand, within ECD_04242at 4522.465 kb on - strand, within ECD_04242at 4522.474 kb on + strand, within ECD_04242at 4522.553 kb on - strandat 4522.594 kb on + strandat 4522.595 kb on - strandat 4522.598 kb on - strandat 4522.642 kb on + strand, within ECD_04243at 4522.655 kb on + strand, within ECD_04243at 4522.655 kb on + strand, within ECD_04243at 4522.655 kb on + strand, within ECD_04243at 4522.803 kb on + strand, within ECD_04243at 4522.803 kb on + strand, within ECD_04243at 4522.807 kb on + strand, within ECD_04243at 4522.876 kb on - strand, within ECD_04243at 4522.876 kb on - strand, within ECD_04243at 4522.926 kb on + strand, within ECD_04243at 4522.935 kb on + strand, within ECD_04243at 4522.935 kb on + strand, within ECD_04243at 4522.935 kb on + strand, within ECD_04243at 4522.935 kb on + strand, within ECD_04243at 4522.970 kb on + strand, within ECD_04243at 4522.971 kb on - strand, within ECD_04243at 4522.971 kb on - strand, within ECD_04243at 4523.023 kb on + strand, within ECD_04243at 4523.023 kb on + strand, within ECD_04243at 4523.158 kb on + strandat 4523.166 kb on + strandat 4523.166 kb on + strandat 4523.167 kb on - strandat 4523.167 kb on - strandat 4523.170 kb on + strandat 4523.170 kb on + strandat 4523.171 kb on - strandat 4523.191 kb on + strandat 4523.192 kb on - strandat 4523.341 kb on - strand, within ECD_04244at 4523.363 kb on + strand, within ECD_04244at 4523.364 kb on - strand, within ECD_04244at 4523.458 kb on + strand, within ECD_04244at 4523.458 kb on + strand, within ECD_04244at 4523.492 kb on + strand, within ECD_04244at 4523.493 kb on - strand, within ECD_04244at 4523.523 kb on + strand, within ECD_04244at 4523.685 kb on + strand, within ECD_04244at 4523.685 kb on + strand, within ECD_04244at 4523.685 kb on + strand, within ECD_04244at 4523.686 kb on - strand, within ECD_04244at 4523.686 kb on - strand, within ECD_04244at 4523.686 kb on - strand, within ECD_04244at 4523.686 kb on - strand, within ECD_04244at 4523.743 kb on + strand, within ECD_04244at 4523.744 kb on - strand, within ECD_04244at 4523.744 kb on - strand, within ECD_04244at 4523.744 kb on - strand, within ECD_04244at 4523.744 kb on - strand, within ECD_04244at 4523.744 kb on - strand, within ECD_04244at 4523.744 kb on - strand, within ECD_04244at 4523.807 kb on - strand, within ECD_04244at 4523.810 kb on + strand, within ECD_04244at 4523.810 kb on + strand, within ECD_04244at 4523.810 kb on + strand, within ECD_04244at 4523.811 kb on - strand, within ECD_04244at 4523.811 kb on - strand, within ECD_04244at 4523.811 kb on - strand, within ECD_04244at 4523.811 kb on - strand, within ECD_04244at 4523.811 kb on - strand, within ECD_04244at 4523.821 kb on + strand, within ECD_04244at 4523.841 kb on + strand, within ECD_04244at 4523.841 kb on + strand, within ECD_04244at 4523.842 kb on - strand, within ECD_04244at 4523.882 kb on + strand, within ECD_04244at 4524.013 kb on + strandat 4524.090 kb on + strandat 4524.190 kb on + strandat 4524.190 kb on + strandat 4524.190 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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4,522,069 - ECD_04242 0.30 -0.8
4,522,144 + ECD_04242 0.40 -0.1
4,522,174 + ECD_04242 0.44 +0.5
4,522,216 + ECD_04242 0.50 -0.6
4,522,217 - ECD_04242 0.50 +0.1
4,522,334 - ECD_04242 0.66 +0.3
4,522,334 - ECD_04242 0.66 +0.3
4,522,346 - ECD_04242 0.68 -0.4
4,522,372 + ECD_04242 0.72 +0.7
4,522,373 - ECD_04242 0.72 -0.1
4,522,464 + ECD_04242 0.84 +1.6
4,522,465 - ECD_04242 0.84 +0.9
4,522,474 + ECD_04242 0.86 -0.4
4,522,553 - +0.8
4,522,594 + -0.6
4,522,595 - +1.5
4,522,598 - -0.8
4,522,642 + ECD_04243 0.16 +0.1
4,522,655 + ECD_04243 0.18 +0.3
4,522,655 + ECD_04243 0.18 +0.4
4,522,655 + ECD_04243 0.18 -0.1
4,522,803 + ECD_04243 0.40 +0.7
4,522,803 + ECD_04243 0.40 +0.1
4,522,807 + ECD_04243 0.40 +0.6
4,522,876 - ECD_04243 0.50 -0.1
4,522,876 - ECD_04243 0.50 -0.2
4,522,926 + ECD_04243 0.58 +0.3
4,522,935 + ECD_04243 0.59 +0.8
4,522,935 + ECD_04243 0.59 -0.1
4,522,935 + ECD_04243 0.59 +0.8
4,522,935 + ECD_04243 0.59 +0.8
4,522,970 + ECD_04243 0.64 +0.4
4,522,971 - ECD_04243 0.64 +0.5
4,522,971 - ECD_04243 0.64 -0.2
4,523,023 + ECD_04243 0.72 -0.1
4,523,023 + ECD_04243 0.72 +0.5
4,523,158 + +1.0
4,523,166 + -0.2
4,523,166 + +0.3
4,523,167 - +0.3
4,523,167 - +0.3
4,523,170 + +0.0
4,523,170 + +0.5
4,523,171 - +0.5
4,523,191 + +0.8
4,523,192 - +0.0
4,523,341 - ECD_04244 0.12 +1.2
4,523,363 + ECD_04244 0.14 +0.4
4,523,364 - ECD_04244 0.14 -0.3
4,523,458 + ECD_04244 0.26 +0.2
4,523,458 + ECD_04244 0.26 -0.2
4,523,492 + ECD_04244 0.31 +0.6
4,523,493 - ECD_04244 0.31 -0.2
4,523,523 + ECD_04244 0.35 +2.1
4,523,685 + ECD_04244 0.55 +0.2
4,523,685 + ECD_04244 0.55 -0.3
4,523,685 + ECD_04244 0.55 -0.2
4,523,686 - ECD_04244 0.55 +0.8
4,523,686 - ECD_04244 0.55 +1.2
4,523,686 - ECD_04244 0.55 +0.3
4,523,686 - ECD_04244 0.55 +0.9
4,523,743 + ECD_04244 0.62 +1.0
4,523,744 - ECD_04244 0.63 +0.6
4,523,744 - ECD_04244 0.63 +0.8
4,523,744 - ECD_04244 0.63 +0.0
4,523,744 - ECD_04244 0.63 -0.0
4,523,744 - ECD_04244 0.63 +0.2
4,523,744 - ECD_04244 0.63 -0.1
4,523,807 - ECD_04244 0.71 +0.6
4,523,810 + ECD_04244 0.71 +0.7
4,523,810 + ECD_04244 0.71 +0.5
4,523,810 + ECD_04244 0.71 +0.8
4,523,811 - ECD_04244 0.71 +0.1
4,523,811 - ECD_04244 0.71 -1.4
4,523,811 - ECD_04244 0.71 +0.3
4,523,811 - ECD_04244 0.71 +0.7
4,523,811 - ECD_04244 0.71 +0.4
4,523,821 + ECD_04244 0.72 -0.2
4,523,841 + ECD_04244 0.75 +0.8
4,523,841 + ECD_04244 0.75 +0.5
4,523,842 - ECD_04244 0.75 +0.3
4,523,882 + ECD_04244 0.80 -0.5
4,524,013 + +0.3
4,524,090 + +0.3
4,524,190 + +0.0
4,524,190 + +0.3
4,524,190 + +0.7

Or see this region's nucleotide sequence