Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04195 and ECD_04196 overlap by 8 nucleotides ECD_04196 and ECD_04197 are separated by 64 nucleotides ECD_04197 and ECD_04198 are separated by 12 nucleotides ECD_04198 and ECD_04199 overlap by 4 nucleotides
ECD_04195: ECD_04195 - RpoS stabilzer after DNA damage, anti-RssB factor, at 4,466,272 to 4,466,664
_04195
ECD_04196: ECD_04196 - hypochlorite-responsive transcription factor, at 4,466,657 to 4,467,568
_04196
ECD_04197: ECD_04197 - isoaspartyl dipeptidase, at 4,467,633 to 4,468,805
_04197
ECD_04198: ECD_04198 - SpmB family inner membrane protein, at 4,468,818 to 4,469,279
_04198
ECD_04199: ECD_04199 - nucleoside recognition pore and gate family putative inner membrane transporter, at 4,469,276 to 4,469,959
_04199
Position (kb)
4467
4468
4469 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4466.662 kb on + strand at 4466.663 kb on - strand at 4466.725 kb on + strand at 4466.726 kb on - strand at 4466.726 kb on - strand at 4466.743 kb on - strand at 4466.743 kb on - strand at 4466.743 kb on - strand at 4466.780 kb on + strand, within ECD_04196 at 4466.971 kb on - strand, within ECD_04196 at 4467.005 kb on - strand, within ECD_04196 at 4467.169 kb on + strand, within ECD_04196 at 4467.170 kb on - strand, within ECD_04196 at 4467.212 kb on - strand, within ECD_04196 at 4467.221 kb on + strand, within ECD_04196 at 4467.254 kb on + strand, within ECD_04196 at 4467.569 kb on + strand at 4467.576 kb on + strand at 4467.577 kb on - strand at 4467.700 kb on + strand at 4467.700 kb on + strand at 4467.700 kb on + strand at 4467.700 kb on + strand at 4467.701 kb on - strand at 4467.845 kb on - strand, within ECD_04197 at 4468.101 kb on + strand, within ECD_04197 at 4468.101 kb on + strand, within ECD_04197 at 4468.168 kb on + strand, within ECD_04197 at 4468.168 kb on + strand, within ECD_04197 at 4468.168 kb on + strand, within ECD_04197 at 4468.168 kb on + strand, within ECD_04197 at 4468.168 kb on + strand, within ECD_04197 at 4468.169 kb on - strand, within ECD_04197 at 4468.169 kb on - strand, within ECD_04197 at 4468.169 kb on - strand, within ECD_04197 at 4468.169 kb on - strand, within ECD_04197 at 4468.169 kb on - strand, within ECD_04197 at 4468.172 kb on + strand, within ECD_04197 at 4468.172 kb on + strand, within ECD_04197 at 4468.173 kb on - strand, within ECD_04197 at 4468.191 kb on - strand, within ECD_04197 at 4468.397 kb on - strand, within ECD_04197 at 4468.481 kb on + strand, within ECD_04197 at 4468.539 kb on + strand, within ECD_04197 at 4468.613 kb on + strand, within ECD_04197 at 4468.665 kb on + strand, within ECD_04197 at 4468.753 kb on + strand at 4468.778 kb on + strand at 4468.779 kb on - strand at 4468.827 kb on - strand at 4468.827 kb on - strand at 4468.875 kb on - strand, within ECD_04198 at 4468.880 kb on + strand, within ECD_04198 at 4468.881 kb on - strand, within ECD_04198 at 4468.891 kb on + strand, within ECD_04198 at 4468.891 kb on + strand, within ECD_04198 at 4468.957 kb on + strand, within ECD_04198 at 4468.972 kb on - strand, within ECD_04198 at 4469.107 kb on - strand, within ECD_04198 at 4469.121 kb on - strand, within ECD_04198 at 4469.121 kb on - strand, within ECD_04198 at 4469.217 kb on - strand, within ECD_04198 at 4469.247 kb on - strand at 4469.321 kb on - strand at 4469.375 kb on + strand, within ECD_04199 at 4469.382 kb on - strand, within ECD_04199 at 4469.434 kb on - strand, within ECD_04199 at 4469.434 kb on - strand, within ECD_04199 at 4469.434 kb on - strand, within ECD_04199 at 4469.466 kb on + strand, within ECD_04199 at 4469.531 kb on - strand, within ECD_04199 at 4469.663 kb on - strand, within ECD_04199
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 4,466,662 + +1.3 4,466,663 - +0.6 4,466,725 + +0.3 4,466,726 - -0.3 4,466,726 - +0.7 4,466,743 - +0.6 4,466,743 - -0.5 4,466,743 - +0.4 4,466,780 + ECD_04196 0.13 +0.4 4,466,971 - ECD_04196 0.34 +0.2 4,467,005 - ECD_04196 0.38 -0.2 4,467,169 + ECD_04196 0.56 -0.5 4,467,170 - ECD_04196 0.56 -0.0 4,467,212 - ECD_04196 0.61 +0.4 4,467,221 + ECD_04196 0.62 -0.1 4,467,254 + ECD_04196 0.65 -0.1 4,467,569 + +0.3 4,467,576 + +0.6 4,467,577 - -0.0 4,467,700 + -0.4 4,467,700 + -0.6 4,467,700 + +0.5 4,467,700 + +0.3 4,467,701 - +0.2 4,467,845 - ECD_04197 0.18 +0.2 4,468,101 + ECD_04197 0.40 -0.2 4,468,101 + ECD_04197 0.40 +0.3 4,468,168 + ECD_04197 0.46 +0.9 4,468,168 + ECD_04197 0.46 -0.0 4,468,168 + ECD_04197 0.46 -0.4 4,468,168 + ECD_04197 0.46 +0.3 4,468,168 + ECD_04197 0.46 +0.2 4,468,169 - ECD_04197 0.46 +0.6 4,468,169 - ECD_04197 0.46 +0.0 4,468,169 - ECD_04197 0.46 +0.6 4,468,169 - ECD_04197 0.46 +1.3 4,468,169 - ECD_04197 0.46 -0.1 4,468,172 + ECD_04197 0.46 -0.3 4,468,172 + ECD_04197 0.46 -0.7 4,468,173 - ECD_04197 0.46 -0.3 4,468,191 - ECD_04197 0.48 -1.3 4,468,397 - ECD_04197 0.65 -0.1 4,468,481 + ECD_04197 0.72 +0.5 4,468,539 + ECD_04197 0.77 +0.6 4,468,613 + ECD_04197 0.84 +0.2 4,468,665 + ECD_04197 0.88 +0.1 4,468,753 + +0.9 4,468,778 + +0.5 4,468,779 - -0.5 4,468,827 - -0.6 4,468,827 - +0.2 4,468,875 - ECD_04198 0.12 +0.9 4,468,880 + ECD_04198 0.13 -0.0 4,468,881 - ECD_04198 0.14 +1.0 4,468,891 + ECD_04198 0.16 -0.6 4,468,891 + ECD_04198 0.16 +0.2 4,468,957 + ECD_04198 0.30 +1.9 4,468,972 - ECD_04198 0.33 +0.1 4,469,107 - ECD_04198 0.63 +0.7 4,469,121 - ECD_04198 0.66 -0.3 4,469,121 - ECD_04198 0.66 +0.9 4,469,217 - ECD_04198 0.86 +0.2 4,469,247 - -0.7 4,469,321 - +0.2 4,469,375 + ECD_04199 0.14 -1.4 4,469,382 - ECD_04199 0.15 +0.2 4,469,434 - ECD_04199 0.23 -0.5 4,469,434 - ECD_04199 0.23 +0.4 4,469,434 - ECD_04199 0.23 -2.3 4,469,466 + ECD_04199 0.28 +0.7 4,469,531 - ECD_04199 0.37 -0.6 4,469,663 - ECD_04199 0.57 -0.5
Or see this region's nucleotide sequence