Strain Fitness in Escherichia coli BL21 around ECD_04147

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04146 and ECD_04147 are separated by 115 nucleotidesECD_04147 and ECD_04148 are separated by 31 nucleotides ECD_04146: ECD_04146 - IS911 orfA-like protein, at 4,417,782 to 4,418,621 _04146 ECD_04147: ECD_04147 - hypothetical protein, at 4,418,737 to 4,419,000 _04147 ECD_04148: ECD_04148 - secondary glycine betaine transporter BetU, at 4,419,032 to 4,421,035 _04148 Position (kb) 4418 4419 4420Strain fitness (log2 ratio) -1 0 1at 4417.776 kb on + strandat 4418.282 kb on + strand, within ECD_04146at 4418.327 kb on + strand, within ECD_04146at 4418.351 kb on - strand, within ECD_04146at 4418.378 kb on + strand, within ECD_04146at 4418.379 kb on - strand, within ECD_04146at 4418.467 kb on - strand, within ECD_04146at 4418.471 kb on - strand, within ECD_04146at 4418.471 kb on - strand, within ECD_04146at 4418.506 kb on - strand, within ECD_04146at 4418.506 kb on - strand, within ECD_04146at 4418.659 kb on - strandat 4418.689 kb on - strandat 4418.696 kb on + strandat 4418.697 kb on - strandat 4418.714 kb on + strandat 4418.714 kb on + strandat 4418.715 kb on - strandat 4418.731 kb on + strandat 4418.732 kb on - strandat 4418.747 kb on + strandat 4418.747 kb on + strandat 4418.747 kb on + strandat 4418.790 kb on + strand, within ECD_04147at 4418.790 kb on + strand, within ECD_04147at 4418.791 kb on - strand, within ECD_04147at 4418.791 kb on - strand, within ECD_04147at 4418.931 kb on - strand, within ECD_04147at 4418.985 kb on - strandat 4419.031 kb on - strandat 4419.080 kb on + strandat 4419.081 kb on - strandat 4419.147 kb on + strandat 4419.148 kb on - strandat 4419.229 kb on + strandat 4419.230 kb on - strandat 4419.232 kb on - strandat 4419.253 kb on - strand, within ECD_04148at 4419.253 kb on - strand, within ECD_04148at 4419.253 kb on - strand, within ECD_04148at 4419.253 kb on - strand, within ECD_04148at 4419.296 kb on - strand, within ECD_04148at 4419.316 kb on + strand, within ECD_04148at 4419.317 kb on - strand, within ECD_04148at 4419.317 kb on - strand, within ECD_04148at 4419.392 kb on - strand, within ECD_04148at 4419.424 kb on - strand, within ECD_04148at 4419.546 kb on + strand, within ECD_04148at 4419.557 kb on + strand, within ECD_04148at 4419.558 kb on - strand, within ECD_04148at 4419.558 kb on - strand, within ECD_04148at 4419.558 kb on - strand, within ECD_04148at 4419.560 kb on + strand, within ECD_04148at 4419.560 kb on + strand, within ECD_04148at 4419.561 kb on - strand, within ECD_04148at 4419.718 kb on + strand, within ECD_04148at 4419.752 kb on + strand, within ECD_04148at 4419.860 kb on - strand, within ECD_04148at 4419.911 kb on - strand, within ECD_04148at 4419.911 kb on - strand, within ECD_04148

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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4,417,776 + -0.3
4,418,282 + ECD_04146 0.60 -0.2
4,418,327 + ECD_04146 0.65 +0.7
4,418,351 - ECD_04146 0.68 +0.4
4,418,378 + ECD_04146 0.71 +1.5
4,418,379 - ECD_04146 0.71 +0.3
4,418,467 - ECD_04146 0.82 +0.4
4,418,471 - ECD_04146 0.82 -0.1
4,418,471 - ECD_04146 0.82 +0.9
4,418,506 - ECD_04146 0.86 +0.3
4,418,506 - ECD_04146 0.86 +1.4
4,418,659 - -0.1
4,418,689 - -0.3
4,418,696 + +0.0
4,418,697 - -0.3
4,418,714 + -0.3
4,418,714 + +0.4
4,418,715 - +0.5
4,418,731 + +0.8
4,418,732 - +0.5
4,418,747 + -0.2
4,418,747 + +0.7
4,418,747 + +0.7
4,418,790 + ECD_04147 0.20 +0.4
4,418,790 + ECD_04147 0.20 -0.5
4,418,791 - ECD_04147 0.20 -0.1
4,418,791 - ECD_04147 0.20 +0.8
4,418,931 - ECD_04147 0.73 +1.1
4,418,985 - -0.2
4,419,031 - -0.5
4,419,080 + -1.4
4,419,081 - -0.3
4,419,147 + +0.5
4,419,148 - +0.9
4,419,229 + +0.1
4,419,230 - +0.1
4,419,232 - -0.7
4,419,253 - ECD_04148 0.11 -0.6
4,419,253 - ECD_04148 0.11 -1.4
4,419,253 - ECD_04148 0.11 -0.7
4,419,253 - ECD_04148 0.11 +0.7
4,419,296 - ECD_04148 0.13 +1.2
4,419,316 + ECD_04148 0.14 +0.1
4,419,317 - ECD_04148 0.14 +0.2
4,419,317 - ECD_04148 0.14 +0.8
4,419,392 - ECD_04148 0.18 +0.3
4,419,424 - ECD_04148 0.20 +0.1
4,419,546 + ECD_04148 0.26 +0.4
4,419,557 + ECD_04148 0.26 +1.6
4,419,558 - ECD_04148 0.26 +0.6
4,419,558 - ECD_04148 0.26 -0.3
4,419,558 - ECD_04148 0.26 +0.7
4,419,560 + ECD_04148 0.26 +0.3
4,419,560 + ECD_04148 0.26 -0.0
4,419,561 - ECD_04148 0.26 +0.4
4,419,718 + ECD_04148 0.34 -0.8
4,419,752 + ECD_04148 0.36 -1.1
4,419,860 - ECD_04148 0.41 -1.1
4,419,911 - ECD_04148 0.44 +0.4
4,419,911 - ECD_04148 0.44 +0.5

Or see this region's nucleotide sequence