Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04146 and ECD_04147 are separated by 115 nucleotides ECD_04147 and ECD_04148 are separated by 31 nucleotides
ECD_04146: ECD_04146 - IS911 orfA-like protein, at 4,417,782 to 4,418,621
_04146
ECD_04147: ECD_04147 - hypothetical protein, at 4,418,737 to 4,419,000
_04147
ECD_04148: ECD_04148 - secondary glycine betaine transporter BetU, at 4,419,032 to 4,421,035
_04148
Position (kb)
4418
4419
4420 Strain fitness (log2 ratio)
-1
0
1 at 4417.776 kb on + strand at 4418.282 kb on + strand, within ECD_04146 at 4418.327 kb on + strand, within ECD_04146 at 4418.351 kb on - strand, within ECD_04146 at 4418.378 kb on + strand, within ECD_04146 at 4418.379 kb on - strand, within ECD_04146 at 4418.467 kb on - strand, within ECD_04146 at 4418.471 kb on - strand, within ECD_04146 at 4418.471 kb on - strand, within ECD_04146 at 4418.506 kb on - strand, within ECD_04146 at 4418.506 kb on - strand, within ECD_04146 at 4418.659 kb on - strand at 4418.689 kb on - strand at 4418.696 kb on + strand at 4418.697 kb on - strand at 4418.714 kb on + strand at 4418.714 kb on + strand at 4418.715 kb on - strand at 4418.731 kb on + strand at 4418.732 kb on - strand at 4418.747 kb on + strand at 4418.747 kb on + strand at 4418.747 kb on + strand at 4418.790 kb on + strand, within ECD_04147 at 4418.790 kb on + strand, within ECD_04147 at 4418.791 kb on - strand, within ECD_04147 at 4418.791 kb on - strand, within ECD_04147 at 4418.931 kb on - strand, within ECD_04147 at 4418.985 kb on - strand at 4419.031 kb on - strand at 4419.080 kb on + strand at 4419.081 kb on - strand at 4419.147 kb on + strand at 4419.148 kb on - strand at 4419.229 kb on + strand at 4419.230 kb on - strand at 4419.232 kb on - strand at 4419.253 kb on - strand, within ECD_04148 at 4419.253 kb on - strand, within ECD_04148 at 4419.253 kb on - strand, within ECD_04148 at 4419.253 kb on - strand, within ECD_04148 at 4419.296 kb on - strand, within ECD_04148 at 4419.316 kb on + strand, within ECD_04148 at 4419.317 kb on - strand, within ECD_04148 at 4419.317 kb on - strand, within ECD_04148 at 4419.392 kb on - strand, within ECD_04148 at 4419.424 kb on - strand, within ECD_04148 at 4419.546 kb on + strand, within ECD_04148 at 4419.557 kb on + strand, within ECD_04148 at 4419.558 kb on - strand, within ECD_04148 at 4419.558 kb on - strand, within ECD_04148 at 4419.558 kb on - strand, within ECD_04148 at 4419.560 kb on + strand, within ECD_04148 at 4419.560 kb on + strand, within ECD_04148 at 4419.561 kb on - strand, within ECD_04148 at 4419.718 kb on + strand, within ECD_04148 at 4419.752 kb on + strand, within ECD_04148 at 4419.860 kb on - strand, within ECD_04148 at 4419.911 kb on - strand, within ECD_04148 at 4419.911 kb on - strand, within ECD_04148
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 4,417,776 + -0.3 4,418,282 + ECD_04146 0.60 -0.2 4,418,327 + ECD_04146 0.65 +0.7 4,418,351 - ECD_04146 0.68 +0.4 4,418,378 + ECD_04146 0.71 +1.5 4,418,379 - ECD_04146 0.71 +0.3 4,418,467 - ECD_04146 0.82 +0.4 4,418,471 - ECD_04146 0.82 -0.1 4,418,471 - ECD_04146 0.82 +0.9 4,418,506 - ECD_04146 0.86 +0.3 4,418,506 - ECD_04146 0.86 +1.4 4,418,659 - -0.1 4,418,689 - -0.3 4,418,696 + +0.0 4,418,697 - -0.3 4,418,714 + -0.3 4,418,714 + +0.4 4,418,715 - +0.5 4,418,731 + +0.8 4,418,732 - +0.5 4,418,747 + -0.2 4,418,747 + +0.7 4,418,747 + +0.7 4,418,790 + ECD_04147 0.20 +0.4 4,418,790 + ECD_04147 0.20 -0.5 4,418,791 - ECD_04147 0.20 -0.1 4,418,791 - ECD_04147 0.20 +0.8 4,418,931 - ECD_04147 0.73 +1.1 4,418,985 - -0.2 4,419,031 - -0.5 4,419,080 + -1.4 4,419,081 - -0.3 4,419,147 + +0.5 4,419,148 - +0.9 4,419,229 + +0.1 4,419,230 - +0.1 4,419,232 - -0.7 4,419,253 - ECD_04148 0.11 -0.6 4,419,253 - ECD_04148 0.11 -1.4 4,419,253 - ECD_04148 0.11 -0.7 4,419,253 - ECD_04148 0.11 +0.7 4,419,296 - ECD_04148 0.13 +1.2 4,419,316 + ECD_04148 0.14 +0.1 4,419,317 - ECD_04148 0.14 +0.2 4,419,317 - ECD_04148 0.14 +0.8 4,419,392 - ECD_04148 0.18 +0.3 4,419,424 - ECD_04148 0.20 +0.1 4,419,546 + ECD_04148 0.26 +0.4 4,419,557 + ECD_04148 0.26 +1.6 4,419,558 - ECD_04148 0.26 +0.6 4,419,558 - ECD_04148 0.26 -0.3 4,419,558 - ECD_04148 0.26 +0.7 4,419,560 + ECD_04148 0.26 +0.3 4,419,560 + ECD_04148 0.26 -0.0 4,419,561 - ECD_04148 0.26 +0.4 4,419,718 + ECD_04148 0.34 -0.8 4,419,752 + ECD_04148 0.36 -1.1 4,419,860 - ECD_04148 0.41 -1.1 4,419,911 - ECD_04148 0.44 +0.4 4,419,911 - ECD_04148 0.44 +0.5
Or see this region's nucleotide sequence