Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04117 and ECD_04118 are separated by 144 nucleotides ECD_04118 and ECD_04119 are separated by 122 nucleotides ECD_04119 and ECD_04120 are separated by 72 nucleotides
ECD_04117: ECD_04117 - transcriptional repressor for divergent bdcA, at 4,385,766 to 4,386,359
_04117
ECD_04118: ECD_04118 - biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein, at 4,386,504 to 4,386,956
_04118
ECD_04119: ECD_04119 - SopA-central-domain-like hexapeptide repeat protein, at 4,387,079 to 4,388,731
_04119
ECD_04120: ECD_04120 - ornithine carbamoyltransferase 1, at 4,388,804 to 4,389,808
_04120
Position (kb) 4387
4388
4389 Strain fitness (log2 ratio) -1
0
1 at 4386.165 kb on + strand, within ECD_04117 at 4386.189 kb on + strand, within ECD_04117 at 4386.189 kb on + strand, within ECD_04117 at 4386.190 kb on - strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.196 kb on - strand, within ECD_04117 at 4386.198 kb on - strand, within ECD_04117 at 4386.518 kb on + strand at 4386.519 kb on - strand at 4386.524 kb on + strand at 4386.553 kb on + strand, within ECD_04118 at 4386.572 kb on + strand, within ECD_04118 at 4386.572 kb on + strand, within ECD_04118 at 4386.639 kb on + strand, within ECD_04118 at 4386.640 kb on - strand, within ECD_04118 at 4386.640 kb on - strand, within ECD_04118 at 4386.794 kb on + strand, within ECD_04118 at 4386.844 kb on + strand, within ECD_04118 at 4388.448 kb on + strand, within ECD_04119 at 4388.842 kb on + strand at 4388.842 kb on + strand at 4388.843 kb on - strand at 4388.924 kb on + strand, within ECD_04120 at 4388.925 kb on - strand, within ECD_04120 at 4388.925 kb on - strand, within ECD_04120 at 4388.925 kb on - strand, within ECD_04120 at 4389.049 kb on - strand, within ECD_04120 at 4389.110 kb on + strand, within ECD_04120 at 4389.110 kb on + strand, within ECD_04120 at 4389.110 kb on + strand, within ECD_04120 at 4389.111 kb on - strand, within ECD_04120 at 4389.120 kb on + strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.124 kb on + strand, within ECD_04120 at 4389.124 kb on + strand, within ECD_04120 at 4389.125 kb on - strand, within ECD_04120 at 4389.153 kb on - strand, within ECD_04120 at 4389.153 kb on - strand, within ECD_04120 at 4389.153 kb on - strand, within ECD_04120 at 4389.328 kb on - strand, within ECD_04120 at 4389.450 kb on + strand, within ECD_04120 at 4389.451 kb on - strand, within ECD_04120 at 4389.507 kb on + strand, within ECD_04120 at 4389.551 kb on - strand, within ECD_04120 at 4389.583 kb on - strand, within ECD_04120 at 4389.583 kb on - strand, within ECD_04120 at 4389.583 kb on - strand, within ECD_04120
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 4,386,165 + ECD_04117 0.67 +0.1 4,386,189 + ECD_04117 0.71 +0.2 4,386,189 + ECD_04117 0.71 +0.3 4,386,190 - ECD_04117 0.71 -0.8 4,386,195 + ECD_04117 0.72 +0.9 4,386,195 + ECD_04117 0.72 -0.2 4,386,195 + ECD_04117 0.72 +0.2 4,386,195 + ECD_04117 0.72 +0.9 4,386,195 + ECD_04117 0.72 -0.1 4,386,196 - ECD_04117 0.72 -0.5 4,386,198 - ECD_04117 0.73 -0.3 4,386,518 + -0.6 4,386,519 - +0.1 4,386,524 + +0.9 4,386,553 + ECD_04118 0.11 -0.3 4,386,572 + ECD_04118 0.15 -0.1 4,386,572 + ECD_04118 0.15 +0.5 4,386,639 + ECD_04118 0.30 +0.3 4,386,640 - ECD_04118 0.30 -0.3 4,386,640 - ECD_04118 0.30 -1.0 4,386,794 + ECD_04118 0.64 +0.5 4,386,844 + ECD_04118 0.75 -0.0 4,388,448 + ECD_04119 0.83 +0.7 4,388,842 + +0.8 4,388,842 + -0.2 4,388,843 - +0.1 4,388,924 + ECD_04120 0.12 +0.5 4,388,925 - ECD_04120 0.12 +0.3 4,388,925 - ECD_04120 0.12 -1.1 4,388,925 - ECD_04120 0.12 -0.9 4,389,049 - ECD_04120 0.24 -0.7 4,389,110 + ECD_04120 0.30 +0.5 4,389,110 + ECD_04120 0.30 -0.1 4,389,110 + ECD_04120 0.30 +0.3 4,389,111 - ECD_04120 0.31 -0.0 4,389,120 + ECD_04120 0.31 +0.0 4,389,121 - ECD_04120 0.32 +0.6 4,389,121 - ECD_04120 0.32 +0.0 4,389,121 - ECD_04120 0.32 +1.7 4,389,121 - ECD_04120 0.32 -0.1 4,389,124 + ECD_04120 0.32 -0.1 4,389,124 + ECD_04120 0.32 +0.7 4,389,125 - ECD_04120 0.32 +0.0 4,389,153 - ECD_04120 0.35 +0.6 4,389,153 - ECD_04120 0.35 -1.1 4,389,153 - ECD_04120 0.35 +0.4 4,389,328 - ECD_04120 0.52 -1.1 4,389,450 + ECD_04120 0.64 +0.1 4,389,451 - ECD_04120 0.64 +0.2 4,389,507 + ECD_04120 0.70 -0.4 4,389,551 - ECD_04120 0.74 +0.3 4,389,583 - ECD_04120 0.78 +0.2 4,389,583 - ECD_04120 0.78 +0.3 4,389,583 - ECD_04120 0.78 -0.0
Or see this region's nucleotide sequence