Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04060 and ECD_04061 are separated by 15 nucleotides ECD_04061 and ECD_04062 are separated by 9 nucleotides ECD_04062 and ECD_04063 are separated by 13 nucleotides ECD_04063 and ECD_04064 are separated by 9 nucleotides
ECD_04060: ECD_04060 - L-ascorbate-specific enzyme IIC permease component of PTS, at 4,326,500 to 4,327,897
_04060
ECD_04061: ECD_04061 - L-ascorbate-specific enzyme IIB component of PTS, at 4,327,913 to 4,328,218
_04061
ECD_04062: ECD_04062 - L-ascorbate-specific enzyme IIA component of PTS, at 4,328,228 to 4,328,692
_04062
ECD_04063: ECD_04063 - 3-keto-L-gulonate 6-phosphate decarboxylase, at 4,328,706 to 4,329,356
_04063
ECD_04064: ECD_04064 - L-xylulose 5-phosphate 3-epimerase, at 4,329,366 to 4,330,220
_04064
Position (kb)
4328
4329 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4327.301 kb on + strand, within ECD_04060 at 4327.301 kb on + strand, within ECD_04060 at 4327.302 kb on - strand, within ECD_04060 at 4327.302 kb on - strand, within ECD_04060 at 4327.302 kb on - strand, within ECD_04060 at 4327.451 kb on - strand, within ECD_04060 at 4327.454 kb on + strand, within ECD_04060 at 4327.456 kb on + strand, within ECD_04060 at 4327.456 kb on + strand, within ECD_04060 at 4327.456 kb on + strand, within ECD_04060 at 4327.457 kb on - strand, within ECD_04060 at 4327.457 kb on - strand, within ECD_04060 at 4327.457 kb on - strand, within ECD_04060 at 4327.489 kb on + strand, within ECD_04060 at 4327.490 kb on - strand, within ECD_04060 at 4327.792 kb on + strand at 4327.809 kb on + strand at 4327.823 kb on + strand at 4327.823 kb on + strand at 4327.823 kb on + strand at 4327.823 kb on + strand at 4327.823 kb on + strand at 4327.823 kb on + strand at 4327.823 kb on + strand at 4327.823 kb on + strand at 4327.823 kb on + strand at 4327.823 kb on + strand at 4327.824 kb on - strand at 4327.824 kb on - strand at 4327.824 kb on - strand at 4327.824 kb on - strand at 4327.825 kb on + strand at 4327.825 kb on + strand at 4327.825 kb on + strand at 4327.825 kb on + strand at 4327.825 kb on + strand at 4327.825 kb on + strand at 4327.826 kb on - strand at 4327.826 kb on - strand at 4327.826 kb on - strand at 4327.826 kb on - strand at 4327.826 kb on - strand at 4327.895 kb on + strand at 4327.896 kb on - strand at 4327.912 kb on + strand at 4327.920 kb on + strand at 4327.924 kb on + strand at 4327.924 kb on + strand at 4327.924 kb on + strand at 4327.924 kb on + strand at 4327.924 kb on + strand at 4327.924 kb on + strand at 4328.083 kb on + strand, within ECD_04061 at 4328.083 kb on + strand, within ECD_04061 at 4328.084 kb on - strand, within ECD_04061 at 4328.084 kb on - strand, within ECD_04061 at 4328.123 kb on + strand, within ECD_04061 at 4328.124 kb on - strand, within ECD_04061 at 4328.124 kb on - strand, within ECD_04061 at 4328.235 kb on + strand at 4328.235 kb on + strand at 4328.257 kb on + strand at 4328.258 kb on - strand at 4328.258 kb on - strand at 4328.258 kb on - strand at 4328.304 kb on + strand, within ECD_04062 at 4328.357 kb on + strand, within ECD_04062 at 4328.396 kb on + strand, within ECD_04062 at 4328.453 kb on - strand, within ECD_04062 at 4328.655 kb on + strand at 4328.655 kb on + strand at 4328.690 kb on + strand at 4328.691 kb on - strand at 4328.691 kb on - strand at 4328.723 kb on - strand at 4328.723 kb on - strand at 4328.927 kb on + strand, within ECD_04063 at 4328.928 kb on - strand, within ECD_04063 at 4328.928 kb on - strand, within ECD_04063 at 4328.962 kb on + strand, within ECD_04063 at 4329.007 kb on + strand, within ECD_04063 at 4329.007 kb on + strand, within ECD_04063 at 4329.164 kb on + strand, within ECD_04063 at 4329.252 kb on - strand, within ECD_04063 at 4329.365 kb on + strand at 4329.396 kb on + strand at 4329.485 kb on - strand, within ECD_04064 at 4329.659 kb on + strand, within ECD_04064 at 4329.660 kb on - strand, within ECD_04064
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 4,327,301 + ECD_04060 0.57 +0.5 4,327,301 + ECD_04060 0.57 -0.4 4,327,302 - ECD_04060 0.57 -0.4 4,327,302 - ECD_04060 0.57 -0.9 4,327,302 - ECD_04060 0.57 +0.0 4,327,451 - ECD_04060 0.68 -1.1 4,327,454 + ECD_04060 0.68 -0.3 4,327,456 + ECD_04060 0.68 +0.2 4,327,456 + ECD_04060 0.68 +0.6 4,327,456 + ECD_04060 0.68 -0.1 4,327,457 - ECD_04060 0.68 +0.4 4,327,457 - ECD_04060 0.68 -0.6 4,327,457 - ECD_04060 0.68 +0.0 4,327,489 + ECD_04060 0.71 +0.1 4,327,490 - ECD_04060 0.71 -0.3 4,327,792 + -1.0 4,327,809 + -0.5 4,327,823 + +0.1 4,327,823 + +0.3 4,327,823 + -0.2 4,327,823 + -0.4 4,327,823 + +0.1 4,327,823 + -0.4 4,327,823 + +0.4 4,327,823 + +0.4 4,327,823 + +0.6 4,327,823 + +0.5 4,327,824 - -0.0 4,327,824 - +0.4 4,327,824 - -0.1 4,327,824 - +0.2 4,327,825 + -0.7 4,327,825 + +0.2 4,327,825 + -1.1 4,327,825 + -0.1 4,327,825 + +1.1 4,327,825 + +0.2 4,327,826 - +0.1 4,327,826 - -0.7 4,327,826 - +0.0 4,327,826 - -1.3 4,327,826 - +1.0 4,327,895 + +0.4 4,327,896 - -0.3 4,327,912 + +0.1 4,327,920 + -0.5 4,327,924 + +0.2 4,327,924 + +0.4 4,327,924 + -0.1 4,327,924 + +0.3 4,327,924 + +0.5 4,327,924 + +0.5 4,328,083 + ECD_04061 0.56 +0.4 4,328,083 + ECD_04061 0.56 -0.7 4,328,084 - ECD_04061 0.56 +0.5 4,328,084 - ECD_04061 0.56 -0.1 4,328,123 + ECD_04061 0.69 -0.4 4,328,124 - ECD_04061 0.69 +0.5 4,328,124 - ECD_04061 0.69 -0.1 4,328,235 + -0.4 4,328,235 + -0.1 4,328,257 + -1.0 4,328,258 - +2.4 4,328,258 - +1.4 4,328,258 - +0.2 4,328,304 + ECD_04062 0.16 +2.4 4,328,357 + ECD_04062 0.28 +0.8 4,328,396 + ECD_04062 0.36 +0.0 4,328,453 - ECD_04062 0.48 -0.8 4,328,655 + +0.5 4,328,655 + +1.2 4,328,690 + -0.6 4,328,691 - +0.9 4,328,691 - -0.6 4,328,723 - -0.5 4,328,723 - +0.3 4,328,927 + ECD_04063 0.34 +0.2 4,328,928 - ECD_04063 0.34 -0.5 4,328,928 - ECD_04063 0.34 +0.3 4,328,962 + ECD_04063 0.39 -0.1 4,329,007 + ECD_04063 0.46 +0.4 4,329,007 + ECD_04063 0.46 +0.2 4,329,164 + ECD_04063 0.70 -0.4 4,329,252 - ECD_04063 0.84 +0.8 4,329,365 + +0.4 4,329,396 + -2.0 4,329,485 - ECD_04064 0.14 -0.1 4,329,659 + ECD_04064 0.34 -0.3 4,329,660 - ECD_04064 0.34 -1.1
Or see this region's nucleotide sequence