Strain Fitness in Escherichia coli BL21 around ECD_04062

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04060 and ECD_04061 are separated by 15 nucleotidesECD_04061 and ECD_04062 are separated by 9 nucleotidesECD_04062 and ECD_04063 are separated by 13 nucleotidesECD_04063 and ECD_04064 are separated by 9 nucleotides ECD_04060: ECD_04060 - L-ascorbate-specific enzyme IIC permease component of PTS, at 4,326,500 to 4,327,897 _04060 ECD_04061: ECD_04061 - L-ascorbate-specific enzyme IIB component of PTS, at 4,327,913 to 4,328,218 _04061 ECD_04062: ECD_04062 - L-ascorbate-specific enzyme IIA component of PTS, at 4,328,228 to 4,328,692 _04062 ECD_04063: ECD_04063 - 3-keto-L-gulonate 6-phosphate decarboxylase, at 4,328,706 to 4,329,356 _04063 ECD_04064: ECD_04064 - L-xylulose 5-phosphate 3-epimerase, at 4,329,366 to 4,330,220 _04064 Position (kb) 4328 4329Strain fitness (log2 ratio) -2 -1 0 1 2at 4327.301 kb on + strand, within ECD_04060at 4327.301 kb on + strand, within ECD_04060at 4327.302 kb on - strand, within ECD_04060at 4327.302 kb on - strand, within ECD_04060at 4327.302 kb on - strand, within ECD_04060at 4327.451 kb on - strand, within ECD_04060at 4327.454 kb on + strand, within ECD_04060at 4327.456 kb on + strand, within ECD_04060at 4327.456 kb on + strand, within ECD_04060at 4327.456 kb on + strand, within ECD_04060at 4327.457 kb on - strand, within ECD_04060at 4327.457 kb on - strand, within ECD_04060at 4327.457 kb on - strand, within ECD_04060at 4327.489 kb on + strand, within ECD_04060at 4327.490 kb on - strand, within ECD_04060at 4327.792 kb on + strandat 4327.809 kb on + strandat 4327.823 kb on + strandat 4327.823 kb on + strandat 4327.823 kb on + strandat 4327.823 kb on + strandat 4327.823 kb on + strandat 4327.823 kb on + strandat 4327.823 kb on + strandat 4327.823 kb on + strandat 4327.823 kb on + strandat 4327.823 kb on + strandat 4327.824 kb on - strandat 4327.824 kb on - strandat 4327.824 kb on - strandat 4327.824 kb on - strandat 4327.825 kb on + strandat 4327.825 kb on + strandat 4327.825 kb on + strandat 4327.825 kb on + strandat 4327.825 kb on + strandat 4327.825 kb on + strandat 4327.826 kb on - strandat 4327.826 kb on - strandat 4327.826 kb on - strandat 4327.826 kb on - strandat 4327.826 kb on - strandat 4327.895 kb on + strandat 4327.896 kb on - strandat 4327.912 kb on + strandat 4327.920 kb on + strandat 4327.924 kb on + strandat 4327.924 kb on + strandat 4327.924 kb on + strandat 4327.924 kb on + strandat 4327.924 kb on + strandat 4327.924 kb on + strandat 4328.083 kb on + strand, within ECD_04061at 4328.083 kb on + strand, within ECD_04061at 4328.084 kb on - strand, within ECD_04061at 4328.084 kb on - strand, within ECD_04061at 4328.123 kb on + strand, within ECD_04061at 4328.124 kb on - strand, within ECD_04061at 4328.124 kb on - strand, within ECD_04061at 4328.235 kb on + strandat 4328.235 kb on + strandat 4328.257 kb on + strandat 4328.258 kb on - strandat 4328.258 kb on - strandat 4328.258 kb on - strandat 4328.304 kb on + strand, within ECD_04062at 4328.357 kb on + strand, within ECD_04062at 4328.396 kb on + strand, within ECD_04062at 4328.453 kb on - strand, within ECD_04062at 4328.655 kb on + strandat 4328.655 kb on + strandat 4328.690 kb on + strandat 4328.691 kb on - strandat 4328.691 kb on - strandat 4328.723 kb on - strandat 4328.723 kb on - strandat 4328.927 kb on + strand, within ECD_04063at 4328.928 kb on - strand, within ECD_04063at 4328.928 kb on - strand, within ECD_04063at 4328.962 kb on + strand, within ECD_04063at 4329.007 kb on + strand, within ECD_04063at 4329.007 kb on + strand, within ECD_04063at 4329.164 kb on + strand, within ECD_04063at 4329.252 kb on - strand, within ECD_04063at 4329.365 kb on + strandat 4329.396 kb on + strandat 4329.485 kb on - strand, within ECD_04064at 4329.659 kb on + strand, within ECD_04064at 4329.660 kb on - strand, within ECD_04064

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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4,327,301 + ECD_04060 0.57 +0.5
4,327,301 + ECD_04060 0.57 -0.4
4,327,302 - ECD_04060 0.57 -0.4
4,327,302 - ECD_04060 0.57 -0.9
4,327,302 - ECD_04060 0.57 +0.0
4,327,451 - ECD_04060 0.68 -1.1
4,327,454 + ECD_04060 0.68 -0.3
4,327,456 + ECD_04060 0.68 +0.2
4,327,456 + ECD_04060 0.68 +0.6
4,327,456 + ECD_04060 0.68 -0.1
4,327,457 - ECD_04060 0.68 +0.4
4,327,457 - ECD_04060 0.68 -0.6
4,327,457 - ECD_04060 0.68 +0.0
4,327,489 + ECD_04060 0.71 +0.1
4,327,490 - ECD_04060 0.71 -0.3
4,327,792 + -1.0
4,327,809 + -0.5
4,327,823 + +0.1
4,327,823 + +0.3
4,327,823 + -0.2
4,327,823 + -0.4
4,327,823 + +0.1
4,327,823 + -0.4
4,327,823 + +0.4
4,327,823 + +0.4
4,327,823 + +0.6
4,327,823 + +0.5
4,327,824 - -0.0
4,327,824 - +0.4
4,327,824 - -0.1
4,327,824 - +0.2
4,327,825 + -0.7
4,327,825 + +0.2
4,327,825 + -1.1
4,327,825 + -0.1
4,327,825 + +1.1
4,327,825 + +0.2
4,327,826 - +0.1
4,327,826 - -0.7
4,327,826 - +0.0
4,327,826 - -1.3
4,327,826 - +1.0
4,327,895 + +0.4
4,327,896 - -0.3
4,327,912 + +0.1
4,327,920 + -0.5
4,327,924 + +0.2
4,327,924 + +0.4
4,327,924 + -0.1
4,327,924 + +0.3
4,327,924 + +0.5
4,327,924 + +0.5
4,328,083 + ECD_04061 0.56 +0.4
4,328,083 + ECD_04061 0.56 -0.7
4,328,084 - ECD_04061 0.56 +0.5
4,328,084 - ECD_04061 0.56 -0.1
4,328,123 + ECD_04061 0.69 -0.4
4,328,124 - ECD_04061 0.69 +0.5
4,328,124 - ECD_04061 0.69 -0.1
4,328,235 + -0.4
4,328,235 + -0.1
4,328,257 + -1.0
4,328,258 - +2.4
4,328,258 - +1.4
4,328,258 - +0.2
4,328,304 + ECD_04062 0.16 +2.4
4,328,357 + ECD_04062 0.28 +0.8
4,328,396 + ECD_04062 0.36 +0.0
4,328,453 - ECD_04062 0.48 -0.8
4,328,655 + +0.5
4,328,655 + +1.2
4,328,690 + -0.6
4,328,691 - +0.9
4,328,691 - -0.6
4,328,723 - -0.5
4,328,723 - +0.3
4,328,927 + ECD_04063 0.34 +0.2
4,328,928 - ECD_04063 0.34 -0.5
4,328,928 - ECD_04063 0.34 +0.3
4,328,962 + ECD_04063 0.39 -0.1
4,329,007 + ECD_04063 0.46 +0.4
4,329,007 + ECD_04063 0.46 +0.2
4,329,164 + ECD_04063 0.70 -0.4
4,329,252 - ECD_04063 0.84 +0.8
4,329,365 + +0.4
4,329,396 + -2.0
4,329,485 - ECD_04064 0.14 -0.1
4,329,659 + ECD_04064 0.34 -0.3
4,329,660 - ECD_04064 0.34 -1.1

Or see this region's nucleotide sequence