Strain Fitness in Escherichia coli BL21 around ECD_04030

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04029 and ECD_04030 are separated by 21 nucleotidesECD_04030 and ECD_04031 are separated by 96 nucleotides ECD_04029: ECD_04029 - mechanosensitive channel protein, miniconductance, at 4,292,567 to 4,295,890 _04029 ECD_04030: ECD_04030 - phosphatidylserine decarboxylase, at 4,295,912 to 4,296,880 _04030 ECD_04031: ECD_04031 - ribosome small subunit-dependent GTPase A, at 4,296,977 to 4,298,029 _04031 Position (kb) 4295 4296 4297Strain fitness (log2 ratio) -1 0 1at 4294.988 kb on - strand, within ECD_04029at 4295.205 kb on - strand, within ECD_04029at 4295.205 kb on - strand, within ECD_04029at 4295.229 kb on + strand, within ECD_04029at 4295.229 kb on + strand, within ECD_04029at 4295.230 kb on - strand, within ECD_04029at 4295.273 kb on + strand, within ECD_04029at 4295.274 kb on - strand, within ECD_04029at 4295.283 kb on - strand, within ECD_04029at 4295.296 kb on + strand, within ECD_04029at 4295.395 kb on + strand, within ECD_04029at 4295.396 kb on - strand, within ECD_04029at 4295.396 kb on - strand, within ECD_04029at 4295.404 kb on + strand, within ECD_04029at 4295.630 kb on + strandat 4295.631 kb on - strandat 4295.631 kb on - strandat 4295.631 kb on - strandat 4295.631 kb on - strandat 4295.631 kb on - strandat 4295.686 kb on - strandat 4295.754 kb on - strandat 4295.839 kb on - strandat 4295.879 kb on - strandat 4295.913 kb on + strandat 4296.007 kb on + strandat 4296.027 kb on - strand, within ECD_04030at 4296.923 kb on - strandat 4296.923 kb on - strandat 4296.967 kb on - strandat 4296.972 kb on - strandat 4296.972 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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4,294,988 - ECD_04029 0.73 -0.0
4,295,205 - ECD_04029 0.79 -0.4
4,295,205 - ECD_04029 0.79 -0.1
4,295,229 + ECD_04029 0.80 -0.2
4,295,229 + ECD_04029 0.80 +0.7
4,295,230 - ECD_04029 0.80 -0.2
4,295,273 + ECD_04029 0.81 -0.4
4,295,274 - ECD_04029 0.81 -0.2
4,295,283 - ECD_04029 0.82 +0.5
4,295,296 + ECD_04029 0.82 -0.3
4,295,395 + ECD_04029 0.85 +1.1
4,295,396 - ECD_04029 0.85 -0.3
4,295,396 - ECD_04029 0.85 +0.1
4,295,404 + ECD_04029 0.85 -0.5
4,295,630 + -0.1
4,295,631 - -0.6
4,295,631 - -0.0
4,295,631 - +0.3
4,295,631 - +0.6
4,295,631 - +0.2
4,295,686 - +0.1
4,295,754 - +0.3
4,295,839 - +0.3
4,295,879 - -0.4
4,295,913 + -0.2
4,296,007 + +0.3
4,296,027 - ECD_04030 0.12 +0.9
4,296,923 - -1.2
4,296,923 - -0.7
4,296,967 - +0.2
4,296,972 - +0.1
4,296,972 - +0.2

Or see this region's nucleotide sequence