Strain Fitness in Escherichia coli BL21 around ECD_03976

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03974 and ECD_03975 are separated by 20 nucleotidesECD_03975 and ECD_03976 are separated by 66 nucleotidesECD_03976 and ECD_03977 are separated by 24 nucleotidesECD_03977 and ECD_03978 are separated by 132 nucleotides ECD_03974: ECD_03974 - putative DNA-binding transcriptional regulator of phosphonate uptake and biodegradation, at 4,228,884 to 4,229,609 _03974 ECD_03975: ECD_03975 - phosphonate/organophosphate ester transporter, at 4,229,630 to 4,230,448 _03975 ECD_03976: ECD_03976 - phosphonate ABC transporter periplasmic binding protein, at 4,230,515 to 4,231,531 _03976 ECD_03977: ECD_03977 - phosphonate ABC transporter ATPase, at 4,231,556 to 4,232,344 _03977 ECD_03978: ECD_03978 - metalloprotein superfamily protein, at 4,232,477 to 4,232,920 _03978 Position (kb) 4230 4231 4232Strain fitness (log2 ratio) -1 0 1 2at 4229.598 kb on - strandat 4229.609 kb on + strandat 4229.609 kb on + strandat 4229.609 kb on + strandat 4229.609 kb on + strandat 4229.610 kb on - strandat 4229.610 kb on - strandat 4229.610 kb on - strandat 4229.613 kb on + strandat 4229.614 kb on - strandat 4229.614 kb on - strandat 4229.614 kb on - strandat 4229.635 kb on + strandat 4229.635 kb on + strandat 4229.635 kb on + strandat 4229.635 kb on + strandat 4229.644 kb on + strandat 4229.644 kb on + strandat 4229.644 kb on + strandat 4229.692 kb on + strandat 4229.829 kb on + strand, within ECD_03975at 4229.829 kb on + strand, within ECD_03975at 4229.869 kb on - strand, within ECD_03975at 4229.988 kb on - strand, within ECD_03975at 4230.099 kb on + strand, within ECD_03975at 4230.100 kb on - strand, within ECD_03975at 4230.216 kb on + strand, within ECD_03975at 4230.217 kb on - strand, within ECD_03975at 4230.217 kb on - strand, within ECD_03975at 4230.509 kb on + strandat 4230.517 kb on - strandat 4230.772 kb on - strand, within ECD_03976at 4231.024 kb on + strand, within ECD_03976at 4231.024 kb on + strand, within ECD_03976at 4231.044 kb on + strand, within ECD_03976at 4231.044 kb on + strand, within ECD_03976at 4231.045 kb on - strand, within ECD_03976at 4231.045 kb on - strand, within ECD_03976at 4231.148 kb on - strand, within ECD_03976at 4231.315 kb on - strand, within ECD_03976at 4231.371 kb on - strand, within ECD_03976at 4231.517 kb on + strandat 4231.517 kb on + strandat 4231.517 kb on + strandat 4231.648 kb on - strand, within ECD_03977at 4231.702 kb on - strand, within ECD_03977at 4232.036 kb on + strand, within ECD_03977at 4232.037 kb on - strand, within ECD_03977at 4232.173 kb on + strand, within ECD_03977at 4232.204 kb on + strand, within ECD_03977at 4232.407 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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4,229,598 - +0.2
4,229,609 + +0.1
4,229,609 + -0.1
4,229,609 + +0.6
4,229,609 + +0.4
4,229,610 - -0.4
4,229,610 - -0.1
4,229,610 - +1.8
4,229,613 + +0.8
4,229,614 - +0.1
4,229,614 - -0.2
4,229,614 - +1.0
4,229,635 + +0.2
4,229,635 + +0.0
4,229,635 + +0.7
4,229,635 + +0.5
4,229,644 + -0.2
4,229,644 + +0.3
4,229,644 + +0.1
4,229,692 + +0.1
4,229,829 + ECD_03975 0.24 +0.6
4,229,829 + ECD_03975 0.24 -0.7
4,229,869 - ECD_03975 0.29 -0.5
4,229,988 - ECD_03975 0.44 -0.6
4,230,099 + ECD_03975 0.57 +0.2
4,230,100 - ECD_03975 0.57 -1.1
4,230,216 + ECD_03975 0.72 +0.1
4,230,217 - ECD_03975 0.72 +0.6
4,230,217 - ECD_03975 0.72 +0.6
4,230,509 + -1.0
4,230,517 - +0.5
4,230,772 - ECD_03976 0.25 +1.3
4,231,024 + ECD_03976 0.50 +1.4
4,231,024 + ECD_03976 0.50 +1.4
4,231,044 + ECD_03976 0.52 +0.4
4,231,044 + ECD_03976 0.52 -0.7
4,231,045 - ECD_03976 0.52 +0.0
4,231,045 - ECD_03976 0.52 +0.2
4,231,148 - ECD_03976 0.62 -0.0
4,231,315 - ECD_03976 0.79 +0.1
4,231,371 - ECD_03976 0.84 +0.1
4,231,517 + -0.1
4,231,517 + +0.8
4,231,517 + +0.1
4,231,648 - ECD_03977 0.12 +0.3
4,231,702 - ECD_03977 0.19 +0.3
4,232,036 + ECD_03977 0.61 +0.4
4,232,037 - ECD_03977 0.61 -0.0
4,232,173 + ECD_03977 0.78 +0.3
4,232,204 + ECD_03977 0.82 +0.2
4,232,407 - +0.9

Or see this region's nucleotide sequence