Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03974 and ECD_03975 are separated by 20 nucleotides ECD_03975 and ECD_03976 are separated by 66 nucleotides ECD_03976 and ECD_03977 are separated by 24 nucleotides ECD_03977 and ECD_03978 are separated by 132 nucleotides
ECD_03974: ECD_03974 - putative DNA-binding transcriptional regulator of phosphonate uptake and biodegradation, at 4,228,884 to 4,229,609
_03974
ECD_03975: ECD_03975 - phosphonate/organophosphate ester transporter, at 4,229,630 to 4,230,448
_03975
ECD_03976: ECD_03976 - phosphonate ABC transporter periplasmic binding protein, at 4,230,515 to 4,231,531
_03976
ECD_03977: ECD_03977 - phosphonate ABC transporter ATPase, at 4,231,556 to 4,232,344
_03977
ECD_03978: ECD_03978 - metalloprotein superfamily protein, at 4,232,477 to 4,232,920
_03978
Position (kb)
4230
4231
4232 Strain fitness (log2 ratio)
-1
0
1
2 at 4229.598 kb on - strand at 4229.609 kb on + strand at 4229.609 kb on + strand at 4229.609 kb on + strand at 4229.609 kb on + strand at 4229.610 kb on - strand at 4229.610 kb on - strand at 4229.610 kb on - strand at 4229.613 kb on + strand at 4229.614 kb on - strand at 4229.614 kb on - strand at 4229.614 kb on - strand at 4229.635 kb on + strand at 4229.635 kb on + strand at 4229.635 kb on + strand at 4229.635 kb on + strand at 4229.644 kb on + strand at 4229.644 kb on + strand at 4229.644 kb on + strand at 4229.692 kb on + strand at 4229.829 kb on + strand, within ECD_03975 at 4229.829 kb on + strand, within ECD_03975 at 4229.869 kb on - strand, within ECD_03975 at 4229.988 kb on - strand, within ECD_03975 at 4230.099 kb on + strand, within ECD_03975 at 4230.100 kb on - strand, within ECD_03975 at 4230.216 kb on + strand, within ECD_03975 at 4230.217 kb on - strand, within ECD_03975 at 4230.217 kb on - strand, within ECD_03975 at 4230.509 kb on + strand at 4230.517 kb on - strand at 4230.772 kb on - strand, within ECD_03976 at 4231.024 kb on + strand, within ECD_03976 at 4231.024 kb on + strand, within ECD_03976 at 4231.044 kb on + strand, within ECD_03976 at 4231.044 kb on + strand, within ECD_03976 at 4231.045 kb on - strand, within ECD_03976 at 4231.045 kb on - strand, within ECD_03976 at 4231.148 kb on - strand, within ECD_03976 at 4231.315 kb on - strand, within ECD_03976 at 4231.371 kb on - strand, within ECD_03976 at 4231.517 kb on + strand at 4231.517 kb on + strand at 4231.517 kb on + strand at 4231.648 kb on - strand, within ECD_03977 at 4231.702 kb on - strand, within ECD_03977 at 4232.036 kb on + strand, within ECD_03977 at 4232.037 kb on - strand, within ECD_03977 at 4232.173 kb on + strand, within ECD_03977 at 4232.204 kb on + strand, within ECD_03977 at 4232.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 4,229,598 - +0.2 4,229,609 + +0.1 4,229,609 + -0.1 4,229,609 + +0.6 4,229,609 + +0.4 4,229,610 - -0.4 4,229,610 - -0.1 4,229,610 - +1.8 4,229,613 + +0.8 4,229,614 - +0.1 4,229,614 - -0.2 4,229,614 - +1.0 4,229,635 + +0.2 4,229,635 + +0.0 4,229,635 + +0.7 4,229,635 + +0.5 4,229,644 + -0.2 4,229,644 + +0.3 4,229,644 + +0.1 4,229,692 + +0.1 4,229,829 + ECD_03975 0.24 +0.6 4,229,829 + ECD_03975 0.24 -0.7 4,229,869 - ECD_03975 0.29 -0.5 4,229,988 - ECD_03975 0.44 -0.6 4,230,099 + ECD_03975 0.57 +0.2 4,230,100 - ECD_03975 0.57 -1.1 4,230,216 + ECD_03975 0.72 +0.1 4,230,217 - ECD_03975 0.72 +0.6 4,230,217 - ECD_03975 0.72 +0.6 4,230,509 + -1.0 4,230,517 - +0.5 4,230,772 - ECD_03976 0.25 +1.3 4,231,024 + ECD_03976 0.50 +1.4 4,231,024 + ECD_03976 0.50 +1.4 4,231,044 + ECD_03976 0.52 +0.4 4,231,044 + ECD_03976 0.52 -0.7 4,231,045 - ECD_03976 0.52 +0.0 4,231,045 - ECD_03976 0.52 +0.2 4,231,148 - ECD_03976 0.62 -0.0 4,231,315 - ECD_03976 0.79 +0.1 4,231,371 - ECD_03976 0.84 +0.1 4,231,517 + -0.1 4,231,517 + +0.8 4,231,517 + +0.1 4,231,648 - ECD_03977 0.12 +0.3 4,231,702 - ECD_03977 0.19 +0.3 4,232,036 + ECD_03977 0.61 +0.4 4,232,037 - ECD_03977 0.61 -0.0 4,232,173 + ECD_03977 0.78 +0.3 4,232,204 + ECD_03977 0.82 +0.2 4,232,407 - +0.9
Or see this region's nucleotide sequence