Strain Fitness in Escherichia coli BL21 around ECD_03972

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03971 and ECD_03972 overlap by 1 nucleotidesECD_03972 and ECD_03973 overlap by 4 nucleotidesECD_03973 and ECD_03974 are separated by 0 nucleotides ECD_03971: ECD_03971 - ribophosphonate triphosphate synthase complex putative catalytic subunit, at 4,226,786 to 4,227,850 _03971 ECD_03972: ECD_03972 - ribophosphonate triphosphate synthase subunit, at 4,227,850 to 4,228,434 _03972 ECD_03973: ECD_03973 - ribophosphonate triphosphate synthase subunit, at 4,228,431 to 4,228,883 _03973 ECD_03974: ECD_03974 - putative DNA-binding transcriptional regulator of phosphonate uptake and biodegradation, at 4,228,884 to 4,229,609 _03974 Position (kb) 4227 4228 4229Strain fitness (log2 ratio) -1 0 1at 4226.851 kb on - strandat 4226.851 kb on - strandat 4226.851 kb on - strandat 4226.851 kb on - strandat 4227.023 kb on + strand, within ECD_03971at 4227.165 kb on + strand, within ECD_03971at 4227.166 kb on - strand, within ECD_03971at 4227.166 kb on - strand, within ECD_03971at 4227.244 kb on - strand, within ECD_03971at 4227.480 kb on + strand, within ECD_03971at 4227.481 kb on - strand, within ECD_03971at 4227.487 kb on - strand, within ECD_03971at 4227.523 kb on + strand, within ECD_03971at 4227.525 kb on + strand, within ECD_03971at 4227.526 kb on - strand, within ECD_03971at 4227.538 kb on + strand, within ECD_03971at 4227.539 kb on - strand, within ECD_03971at 4227.846 kb on + strandat 4227.846 kb on + strandat 4227.846 kb on + strandat 4227.846 kb on + strandat 4227.847 kb on - strandat 4227.883 kb on - strandat 4228.061 kb on - strand, within ECD_03972at 4228.227 kb on + strand, within ECD_03972at 4228.231 kb on + strand, within ECD_03972at 4228.231 kb on + strand, within ECD_03972at 4228.231 kb on + strand, within ECD_03972at 4228.231 kb on + strand, within ECD_03972at 4228.231 kb on + strand, within ECD_03972at 4228.232 kb on - strand, within ECD_03972at 4228.299 kb on + strand, within ECD_03972at 4228.413 kb on + strandat 4228.413 kb on + strandat 4228.414 kb on - strandat 4228.458 kb on - strandat 4228.514 kb on + strand, within ECD_03973at 4228.551 kb on + strand, within ECD_03973at 4228.643 kb on - strand, within ECD_03973at 4228.744 kb on - strand, within ECD_03973at 4228.778 kb on - strand, within ECD_03973at 4229.001 kb on - strand, within ECD_03974at 4229.001 kb on - strand, within ECD_03974at 4229.001 kb on - strand, within ECD_03974at 4229.164 kb on + strand, within ECD_03974at 4229.165 kb on - strand, within ECD_03974at 4229.165 kb on - strand, within ECD_03974

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
4,226,851 - +0.1
4,226,851 - -0.6
4,226,851 - -0.3
4,226,851 - +0.0
4,227,023 + ECD_03971 0.22 +0.3
4,227,165 + ECD_03971 0.36 -0.5
4,227,166 - ECD_03971 0.36 +0.3
4,227,166 - ECD_03971 0.36 +0.0
4,227,244 - ECD_03971 0.43 -0.0
4,227,480 + ECD_03971 0.65 +0.3
4,227,481 - ECD_03971 0.65 +0.4
4,227,487 - ECD_03971 0.66 -0.1
4,227,523 + ECD_03971 0.69 +0.0
4,227,525 + ECD_03971 0.69 +0.6
4,227,526 - ECD_03971 0.69 +0.0
4,227,538 + ECD_03971 0.71 +0.1
4,227,539 - ECD_03971 0.71 -0.4
4,227,846 + -0.7
4,227,846 + +0.7
4,227,846 + +0.0
4,227,846 + -0.0
4,227,847 - +1.0
4,227,883 - +0.1
4,228,061 - ECD_03972 0.36 +0.1
4,228,227 + ECD_03972 0.64 +0.5
4,228,231 + ECD_03972 0.65 +0.5
4,228,231 + ECD_03972 0.65 +0.7
4,228,231 + ECD_03972 0.65 -0.4
4,228,231 + ECD_03972 0.65 +0.4
4,228,231 + ECD_03972 0.65 -0.9
4,228,232 - ECD_03972 0.65 +0.9
4,228,299 + ECD_03972 0.77 +1.3
4,228,413 + -0.1
4,228,413 + +0.7
4,228,414 - -0.3
4,228,458 - -0.8
4,228,514 + ECD_03973 0.18 +0.4
4,228,551 + ECD_03973 0.26 -0.7
4,228,643 - ECD_03973 0.47 -0.2
4,228,744 - ECD_03973 0.69 +0.3
4,228,778 - ECD_03973 0.77 -0.0
4,229,001 - ECD_03974 0.16 -0.5
4,229,001 - ECD_03974 0.16 +0.6
4,229,001 - ECD_03974 0.16 +0.2
4,229,164 + ECD_03974 0.39 +0.8
4,229,165 - ECD_03974 0.39 +0.9
4,229,165 - ECD_03974 0.39 +0.1

Or see this region's nucleotide sequence