Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03971 and ECD_03972 overlap by 1 nucleotides ECD_03972 and ECD_03973 overlap by 4 nucleotides ECD_03973 and ECD_03974 are separated by 0 nucleotides
ECD_03971: ECD_03971 - ribophosphonate triphosphate synthase complex putative catalytic subunit, at 4,226,786 to 4,227,850
_03971
ECD_03972: ECD_03972 - ribophosphonate triphosphate synthase subunit, at 4,227,850 to 4,228,434
_03972
ECD_03973: ECD_03973 - ribophosphonate triphosphate synthase subunit, at 4,228,431 to 4,228,883
_03973
ECD_03974: ECD_03974 - putative DNA-binding transcriptional regulator of phosphonate uptake and biodegradation, at 4,228,884 to 4,229,609
_03974
Position (kb)
4227
4228
4229 Strain fitness (log2 ratio)
-1
0
1 at 4226.851 kb on - strand at 4226.851 kb on - strand at 4226.851 kb on - strand at 4226.851 kb on - strand at 4227.023 kb on + strand, within ECD_03971 at 4227.165 kb on + strand, within ECD_03971 at 4227.166 kb on - strand, within ECD_03971 at 4227.166 kb on - strand, within ECD_03971 at 4227.244 kb on - strand, within ECD_03971 at 4227.480 kb on + strand, within ECD_03971 at 4227.481 kb on - strand, within ECD_03971 at 4227.487 kb on - strand, within ECD_03971 at 4227.523 kb on + strand, within ECD_03971 at 4227.525 kb on + strand, within ECD_03971 at 4227.526 kb on - strand, within ECD_03971 at 4227.538 kb on + strand, within ECD_03971 at 4227.539 kb on - strand, within ECD_03971 at 4227.846 kb on + strand at 4227.846 kb on + strand at 4227.846 kb on + strand at 4227.846 kb on + strand at 4227.847 kb on - strand at 4227.883 kb on - strand at 4228.061 kb on - strand, within ECD_03972 at 4228.227 kb on + strand, within ECD_03972 at 4228.231 kb on + strand, within ECD_03972 at 4228.231 kb on + strand, within ECD_03972 at 4228.231 kb on + strand, within ECD_03972 at 4228.231 kb on + strand, within ECD_03972 at 4228.231 kb on + strand, within ECD_03972 at 4228.232 kb on - strand, within ECD_03972 at 4228.299 kb on + strand, within ECD_03972 at 4228.413 kb on + strand at 4228.413 kb on + strand at 4228.414 kb on - strand at 4228.458 kb on - strand at 4228.514 kb on + strand, within ECD_03973 at 4228.551 kb on + strand, within ECD_03973 at 4228.643 kb on - strand, within ECD_03973 at 4228.744 kb on - strand, within ECD_03973 at 4228.778 kb on - strand, within ECD_03973 at 4229.001 kb on - strand, within ECD_03974 at 4229.001 kb on - strand, within ECD_03974 at 4229.001 kb on - strand, within ECD_03974 at 4229.164 kb on + strand, within ECD_03974 at 4229.165 kb on - strand, within ECD_03974 at 4229.165 kb on - strand, within ECD_03974
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 4,226,851 - +0.1 4,226,851 - -0.6 4,226,851 - -0.3 4,226,851 - +0.0 4,227,023 + ECD_03971 0.22 +0.3 4,227,165 + ECD_03971 0.36 -0.5 4,227,166 - ECD_03971 0.36 +0.3 4,227,166 - ECD_03971 0.36 +0.0 4,227,244 - ECD_03971 0.43 -0.0 4,227,480 + ECD_03971 0.65 +0.3 4,227,481 - ECD_03971 0.65 +0.4 4,227,487 - ECD_03971 0.66 -0.1 4,227,523 + ECD_03971 0.69 +0.0 4,227,525 + ECD_03971 0.69 +0.6 4,227,526 - ECD_03971 0.69 +0.0 4,227,538 + ECD_03971 0.71 +0.1 4,227,539 - ECD_03971 0.71 -0.4 4,227,846 + -0.7 4,227,846 + +0.7 4,227,846 + +0.0 4,227,846 + -0.0 4,227,847 - +1.0 4,227,883 - +0.1 4,228,061 - ECD_03972 0.36 +0.1 4,228,227 + ECD_03972 0.64 +0.5 4,228,231 + ECD_03972 0.65 +0.5 4,228,231 + ECD_03972 0.65 +0.7 4,228,231 + ECD_03972 0.65 -0.4 4,228,231 + ECD_03972 0.65 +0.4 4,228,231 + ECD_03972 0.65 -0.9 4,228,232 - ECD_03972 0.65 +0.9 4,228,299 + ECD_03972 0.77 +1.3 4,228,413 + -0.1 4,228,413 + +0.7 4,228,414 - -0.3 4,228,458 - -0.8 4,228,514 + ECD_03973 0.18 +0.4 4,228,551 + ECD_03973 0.26 -0.7 4,228,643 - ECD_03973 0.47 -0.2 4,228,744 - ECD_03973 0.69 +0.3 4,228,778 - ECD_03973 0.77 -0.0 4,229,001 - ECD_03974 0.16 -0.5 4,229,001 - ECD_03974 0.16 +0.6 4,229,001 - ECD_03974 0.16 +0.2 4,229,164 + ECD_03974 0.39 +0.8 4,229,165 - ECD_03974 0.39 +0.9 4,229,165 - ECD_03974 0.39 +0.1
Or see this region's nucleotide sequence