Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03942 and ECD_03943 are separated by 44 nucleotides ECD_03943 and ECD_03944 overlap by 4 nucleotides ECD_03944 and ECD_03945 overlap by 4 nucleotides
ECD_03942: ECD_03942 - nitrite reductase, formate-dependent, cytochrome, at 4,195,176 to 4,196,612
_03942
ECD_03943: ECD_03943 - nitrite reductase, formate-dependent, penta-heme cytochrome c, at 4,196,657 to 4,197,223
_03943
ECD_03944: ECD_03944 - formate-dependent nitrite reductase, 4Fe4S subunit, at 4,197,220 to 4,197,891
_03944
ECD_03945: ECD_03945 - formate-dependent nitrite reductase, membrane subunit, at 4,197,888 to 4,198,844
_03945
Position (kb)
4196
4197
4198 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4195.709 kb on - strand, within ECD_03942 at 4195.726 kb on - strand, within ECD_03942 at 4195.824 kb on + strand, within ECD_03942 at 4195.824 kb on + strand, within ECD_03942 at 4195.825 kb on - strand, within ECD_03942 at 4195.825 kb on - strand, within ECD_03942 at 4195.825 kb on - strand, within ECD_03942 at 4195.850 kb on + strand, within ECD_03942 at 4195.897 kb on - strand, within ECD_03942 at 4195.897 kb on - strand, within ECD_03942 at 4195.897 kb on - strand, within ECD_03942 at 4195.899 kb on + strand, within ECD_03942 at 4195.899 kb on + strand, within ECD_03942 at 4195.900 kb on - strand, within ECD_03942 at 4195.928 kb on + strand, within ECD_03942 at 4195.974 kb on + strand, within ECD_03942 at 4196.033 kb on + strand, within ECD_03942 at 4196.034 kb on - strand, within ECD_03942 at 4196.088 kb on - strand, within ECD_03942 at 4196.130 kb on - strand, within ECD_03942 at 4196.171 kb on + strand, within ECD_03942 at 4196.171 kb on + strand, within ECD_03942 at 4196.171 kb on + strand, within ECD_03942 at 4196.171 kb on + strand, within ECD_03942 at 4196.171 kb on + strand, within ECD_03942 at 4196.348 kb on + strand, within ECD_03942 at 4196.348 kb on + strand, within ECD_03942 at 4196.588 kb on + strand at 4196.602 kb on + strand at 4196.602 kb on + strand at 4196.656 kb on + strand at 4196.657 kb on - strand at 4196.664 kb on + strand at 4196.665 kb on - strand at 4196.667 kb on + strand at 4196.679 kb on + strand at 4196.680 kb on - strand at 4196.815 kb on + strand, within ECD_03943 at 4196.816 kb on - strand, within ECD_03943 at 4196.816 kb on - strand, within ECD_03943 at 4196.833 kb on + strand, within ECD_03943 at 4196.833 kb on + strand, within ECD_03943 at 4196.834 kb on - strand, within ECD_03943 at 4196.834 kb on - strand, within ECD_03943 at 4196.834 kb on - strand, within ECD_03943 at 4196.834 kb on - strand, within ECD_03943 at 4196.966 kb on + strand, within ECD_03943 at 4196.967 kb on - strand, within ECD_03943 at 4196.967 kb on - strand, within ECD_03943 at 4196.995 kb on + strand, within ECD_03943 at 4196.995 kb on + strand, within ECD_03943 at 4196.995 kb on + strand, within ECD_03943 at 4196.995 kb on + strand, within ECD_03943 at 4196.996 kb on - strand, within ECD_03943 at 4196.996 kb on - strand, within ECD_03943 at 4197.103 kb on + strand, within ECD_03943 at 4197.103 kb on + strand, within ECD_03943 at 4197.103 kb on + strand, within ECD_03943 at 4197.104 kb on - strand, within ECD_03943 at 4197.104 kb on - strand, within ECD_03943 at 4197.117 kb on + strand, within ECD_03943 at 4197.118 kb on - strand, within ECD_03943 at 4197.486 kb on + strand, within ECD_03944 at 4197.579 kb on + strand, within ECD_03944 at 4197.580 kb on - strand, within ECD_03944 at 4197.580 kb on - strand, within ECD_03944 at 4197.688 kb on - strand, within ECD_03944 at 4197.820 kb on + strand, within ECD_03944 at 4198.001 kb on - strand, within ECD_03945 at 4198.037 kb on + strand, within ECD_03945 at 4198.037 kb on + strand, within ECD_03945 at 4198.038 kb on - strand, within ECD_03945 at 4198.149 kb on + strand, within ECD_03945 at 4198.197 kb on + strand, within ECD_03945 at 4198.197 kb on + strand, within ECD_03945 at 4198.198 kb on - strand, within ECD_03945
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 4,195,709 - ECD_03942 0.37 +0.3 4,195,726 - ECD_03942 0.38 -0.3 4,195,824 + ECD_03942 0.45 +2.7 4,195,824 + ECD_03942 0.45 +0.1 4,195,825 - ECD_03942 0.45 -0.5 4,195,825 - ECD_03942 0.45 -0.2 4,195,825 - ECD_03942 0.45 +0.3 4,195,850 + ECD_03942 0.47 +1.2 4,195,897 - ECD_03942 0.50 +0.6 4,195,897 - ECD_03942 0.50 -0.0 4,195,897 - ECD_03942 0.50 +1.1 4,195,899 + ECD_03942 0.50 -0.3 4,195,899 + ECD_03942 0.50 -0.8 4,195,900 - ECD_03942 0.50 -1.2 4,195,928 + ECD_03942 0.52 +0.4 4,195,974 + ECD_03942 0.56 -0.8 4,196,033 + ECD_03942 0.60 -0.8 4,196,034 - ECD_03942 0.60 +1.6 4,196,088 - ECD_03942 0.63 +1.4 4,196,130 - ECD_03942 0.66 +0.7 4,196,171 + ECD_03942 0.69 +0.9 4,196,171 + ECD_03942 0.69 +0.3 4,196,171 + ECD_03942 0.69 -0.1 4,196,171 + ECD_03942 0.69 -0.2 4,196,171 + ECD_03942 0.69 +0.6 4,196,348 + ECD_03942 0.82 +0.2 4,196,348 + ECD_03942 0.82 +0.1 4,196,588 + +0.6 4,196,602 + -0.2 4,196,602 + +0.6 4,196,656 + -0.3 4,196,657 - +0.4 4,196,664 + -0.6 4,196,665 - -0.1 4,196,667 + +1.0 4,196,679 + +0.7 4,196,680 - +1.0 4,196,815 + ECD_03943 0.28 +0.7 4,196,816 - ECD_03943 0.28 +0.5 4,196,816 - ECD_03943 0.28 +1.0 4,196,833 + ECD_03943 0.31 +0.4 4,196,833 + ECD_03943 0.31 +0.7 4,196,834 - ECD_03943 0.31 -0.1 4,196,834 - ECD_03943 0.31 -0.3 4,196,834 - ECD_03943 0.31 +0.5 4,196,834 - ECD_03943 0.31 +0.1 4,196,966 + ECD_03943 0.54 +0.3 4,196,967 - ECD_03943 0.55 +0.5 4,196,967 - ECD_03943 0.55 +0.4 4,196,995 + ECD_03943 0.60 +0.7 4,196,995 + ECD_03943 0.60 +0.6 4,196,995 + ECD_03943 0.60 -0.2 4,196,995 + ECD_03943 0.60 +0.4 4,196,996 - ECD_03943 0.60 +0.1 4,196,996 - ECD_03943 0.60 +1.8 4,197,103 + ECD_03943 0.79 +1.4 4,197,103 + ECD_03943 0.79 +0.8 4,197,103 + ECD_03943 0.79 +1.1 4,197,104 - ECD_03943 0.79 +1.2 4,197,104 - ECD_03943 0.79 -0.8 4,197,117 + ECD_03943 0.81 -2.2 4,197,118 - ECD_03943 0.81 +0.4 4,197,486 + ECD_03944 0.40 -0.3 4,197,579 + ECD_03944 0.53 +0.2 4,197,580 - ECD_03944 0.54 +0.0 4,197,580 - ECD_03944 0.54 -0.6 4,197,688 - ECD_03944 0.70 -0.6 4,197,820 + ECD_03944 0.89 +0.4 4,198,001 - ECD_03945 0.12 +1.0 4,198,037 + ECD_03945 0.16 +0.1 4,198,037 + ECD_03945 0.16 +0.2 4,198,038 - ECD_03945 0.16 +0.1 4,198,149 + ECD_03945 0.27 +0.0 4,198,197 + ECD_03945 0.32 +0.6 4,198,197 + ECD_03945 0.32 +0.1 4,198,198 - ECD_03945 0.32 +0.1
Or see this region's nucleotide sequence