Strain Fitness in Escherichia coli BL21 around ECD_03943

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03942 and ECD_03943 are separated by 44 nucleotidesECD_03943 and ECD_03944 overlap by 4 nucleotidesECD_03944 and ECD_03945 overlap by 4 nucleotides ECD_03942: ECD_03942 - nitrite reductase, formate-dependent, cytochrome, at 4,195,176 to 4,196,612 _03942 ECD_03943: ECD_03943 - nitrite reductase, formate-dependent, penta-heme cytochrome c, at 4,196,657 to 4,197,223 _03943 ECD_03944: ECD_03944 - formate-dependent nitrite reductase, 4Fe4S subunit, at 4,197,220 to 4,197,891 _03944 ECD_03945: ECD_03945 - formate-dependent nitrite reductase, membrane subunit, at 4,197,888 to 4,198,844 _03945 Position (kb) 4196 4197 4198Strain fitness (log2 ratio) -2 -1 0 1 2at 4195.709 kb on - strand, within ECD_03942at 4195.726 kb on - strand, within ECD_03942at 4195.824 kb on + strand, within ECD_03942at 4195.824 kb on + strand, within ECD_03942at 4195.825 kb on - strand, within ECD_03942at 4195.825 kb on - strand, within ECD_03942at 4195.825 kb on - strand, within ECD_03942at 4195.850 kb on + strand, within ECD_03942at 4195.897 kb on - strand, within ECD_03942at 4195.897 kb on - strand, within ECD_03942at 4195.897 kb on - strand, within ECD_03942at 4195.899 kb on + strand, within ECD_03942at 4195.899 kb on + strand, within ECD_03942at 4195.900 kb on - strand, within ECD_03942at 4195.928 kb on + strand, within ECD_03942at 4195.974 kb on + strand, within ECD_03942at 4196.033 kb on + strand, within ECD_03942at 4196.034 kb on - strand, within ECD_03942at 4196.088 kb on - strand, within ECD_03942at 4196.130 kb on - strand, within ECD_03942at 4196.171 kb on + strand, within ECD_03942at 4196.171 kb on + strand, within ECD_03942at 4196.171 kb on + strand, within ECD_03942at 4196.171 kb on + strand, within ECD_03942at 4196.171 kb on + strand, within ECD_03942at 4196.348 kb on + strand, within ECD_03942at 4196.348 kb on + strand, within ECD_03942at 4196.588 kb on + strandat 4196.602 kb on + strandat 4196.602 kb on + strandat 4196.656 kb on + strandat 4196.657 kb on - strandat 4196.664 kb on + strandat 4196.665 kb on - strandat 4196.667 kb on + strandat 4196.679 kb on + strandat 4196.680 kb on - strandat 4196.815 kb on + strand, within ECD_03943at 4196.816 kb on - strand, within ECD_03943at 4196.816 kb on - strand, within ECD_03943at 4196.833 kb on + strand, within ECD_03943at 4196.833 kb on + strand, within ECD_03943at 4196.834 kb on - strand, within ECD_03943at 4196.834 kb on - strand, within ECD_03943at 4196.834 kb on - strand, within ECD_03943at 4196.834 kb on - strand, within ECD_03943at 4196.966 kb on + strand, within ECD_03943at 4196.967 kb on - strand, within ECD_03943at 4196.967 kb on - strand, within ECD_03943at 4196.995 kb on + strand, within ECD_03943at 4196.995 kb on + strand, within ECD_03943at 4196.995 kb on + strand, within ECD_03943at 4196.995 kb on + strand, within ECD_03943at 4196.996 kb on - strand, within ECD_03943at 4196.996 kb on - strand, within ECD_03943at 4197.103 kb on + strand, within ECD_03943at 4197.103 kb on + strand, within ECD_03943at 4197.103 kb on + strand, within ECD_03943at 4197.104 kb on - strand, within ECD_03943at 4197.104 kb on - strand, within ECD_03943at 4197.117 kb on + strand, within ECD_03943at 4197.118 kb on - strand, within ECD_03943at 4197.486 kb on + strand, within ECD_03944at 4197.579 kb on + strand, within ECD_03944at 4197.580 kb on - strand, within ECD_03944at 4197.580 kb on - strand, within ECD_03944at 4197.688 kb on - strand, within ECD_03944at 4197.820 kb on + strand, within ECD_03944at 4198.001 kb on - strand, within ECD_03945at 4198.037 kb on + strand, within ECD_03945at 4198.037 kb on + strand, within ECD_03945at 4198.038 kb on - strand, within ECD_03945at 4198.149 kb on + strand, within ECD_03945at 4198.197 kb on + strand, within ECD_03945at 4198.197 kb on + strand, within ECD_03945at 4198.198 kb on - strand, within ECD_03945

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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4,195,709 - ECD_03942 0.37 +0.3
4,195,726 - ECD_03942 0.38 -0.3
4,195,824 + ECD_03942 0.45 +2.7
4,195,824 + ECD_03942 0.45 +0.1
4,195,825 - ECD_03942 0.45 -0.5
4,195,825 - ECD_03942 0.45 -0.2
4,195,825 - ECD_03942 0.45 +0.3
4,195,850 + ECD_03942 0.47 +1.2
4,195,897 - ECD_03942 0.50 +0.6
4,195,897 - ECD_03942 0.50 -0.0
4,195,897 - ECD_03942 0.50 +1.1
4,195,899 + ECD_03942 0.50 -0.3
4,195,899 + ECD_03942 0.50 -0.8
4,195,900 - ECD_03942 0.50 -1.2
4,195,928 + ECD_03942 0.52 +0.4
4,195,974 + ECD_03942 0.56 -0.8
4,196,033 + ECD_03942 0.60 -0.8
4,196,034 - ECD_03942 0.60 +1.6
4,196,088 - ECD_03942 0.63 +1.4
4,196,130 - ECD_03942 0.66 +0.7
4,196,171 + ECD_03942 0.69 +0.9
4,196,171 + ECD_03942 0.69 +0.3
4,196,171 + ECD_03942 0.69 -0.1
4,196,171 + ECD_03942 0.69 -0.2
4,196,171 + ECD_03942 0.69 +0.6
4,196,348 + ECD_03942 0.82 +0.2
4,196,348 + ECD_03942 0.82 +0.1
4,196,588 + +0.6
4,196,602 + -0.2
4,196,602 + +0.6
4,196,656 + -0.3
4,196,657 - +0.4
4,196,664 + -0.6
4,196,665 - -0.1
4,196,667 + +1.0
4,196,679 + +0.7
4,196,680 - +1.0
4,196,815 + ECD_03943 0.28 +0.7
4,196,816 - ECD_03943 0.28 +0.5
4,196,816 - ECD_03943 0.28 +1.0
4,196,833 + ECD_03943 0.31 +0.4
4,196,833 + ECD_03943 0.31 +0.7
4,196,834 - ECD_03943 0.31 -0.1
4,196,834 - ECD_03943 0.31 -0.3
4,196,834 - ECD_03943 0.31 +0.5
4,196,834 - ECD_03943 0.31 +0.1
4,196,966 + ECD_03943 0.54 +0.3
4,196,967 - ECD_03943 0.55 +0.5
4,196,967 - ECD_03943 0.55 +0.4
4,196,995 + ECD_03943 0.60 +0.7
4,196,995 + ECD_03943 0.60 +0.6
4,196,995 + ECD_03943 0.60 -0.2
4,196,995 + ECD_03943 0.60 +0.4
4,196,996 - ECD_03943 0.60 +0.1
4,196,996 - ECD_03943 0.60 +1.8
4,197,103 + ECD_03943 0.79 +1.4
4,197,103 + ECD_03943 0.79 +0.8
4,197,103 + ECD_03943 0.79 +1.1
4,197,104 - ECD_03943 0.79 +1.2
4,197,104 - ECD_03943 0.79 -0.8
4,197,117 + ECD_03943 0.81 -2.2
4,197,118 - ECD_03943 0.81 +0.4
4,197,486 + ECD_03944 0.40 -0.3
4,197,579 + ECD_03944 0.53 +0.2
4,197,580 - ECD_03944 0.54 +0.0
4,197,580 - ECD_03944 0.54 -0.6
4,197,688 - ECD_03944 0.70 -0.6
4,197,820 + ECD_03944 0.89 +0.4
4,198,001 - ECD_03945 0.12 +1.0
4,198,037 + ECD_03945 0.16 +0.1
4,198,037 + ECD_03945 0.16 +0.2
4,198,038 - ECD_03945 0.16 +0.1
4,198,149 + ECD_03945 0.27 +0.0
4,198,197 + ECD_03945 0.32 +0.6
4,198,197 + ECD_03945 0.32 +0.1
4,198,198 - ECD_03945 0.32 +0.1

Or see this region's nucleotide sequence