Strain Fitness in Escherichia coli BL21 around ECD_03737

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03736 and ECD_03737 are separated by 9 nucleotidesECD_03737 and ECD_03738 are separated by 189 nucleotides ECD_03736: ECD_03736 - 3-ketoacyl-CoA thiolase (thiolase I), at 3,934,422 to 3,935,585 _03736 ECD_03737: ECD_03737 - fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase, at 3,935,595 to 3,937,784 _03737 ECD_03738: ECD_03738 - proline dipeptidase, at 3,937,974 to 3,939,305 _03738 Position (kb) 3935 3936 3937 3938Strain fitness (log2 ratio) -2 -1 0 1 2at 3934.628 kb on + strand, within ECD_03736at 3934.631 kb on + strand, within ECD_03736at 3934.810 kb on - strand, within ECD_03736at 3934.810 kb on - strand, within ECD_03736at 3934.877 kb on + strand, within ECD_03736at 3934.878 kb on - strand, within ECD_03736at 3934.892 kb on + strand, within ECD_03736at 3935.118 kb on - strand, within ECD_03736at 3935.118 kb on - strand, within ECD_03736at 3935.118 kb on - strand, within ECD_03736at 3935.140 kb on - strand, within ECD_03736at 3935.226 kb on - strand, within ECD_03736at 3935.226 kb on - strand, within ECD_03736at 3935.292 kb on + strand, within ECD_03736at 3935.292 kb on + strand, within ECD_03736at 3935.292 kb on + strand, within ECD_03736at 3935.292 kb on + strand, within ECD_03736at 3935.292 kb on + strand, within ECD_03736at 3935.292 kb on + strand, within ECD_03736at 3935.293 kb on - strand, within ECD_03736at 3935.293 kb on - strand, within ECD_03736at 3935.293 kb on - strand, within ECD_03736at 3935.293 kb on - strand, within ECD_03736at 3935.293 kb on - strand, within ECD_03736at 3935.293 kb on - strand, within ECD_03736at 3935.385 kb on - strand, within ECD_03736at 3935.387 kb on + strand, within ECD_03736at 3935.387 kb on + strand, within ECD_03736at 3935.387 kb on + strand, within ECD_03736at 3935.387 kb on + strand, within ECD_03736at 3935.388 kb on - strand, within ECD_03736at 3935.413 kb on - strand, within ECD_03736at 3935.413 kb on - strand, within ECD_03736at 3935.484 kb on + strandat 3935.596 kb on + strandat 3935.645 kb on - strandat 3935.647 kb on + strandat 3935.695 kb on + strandat 3935.695 kb on + strandat 3935.695 kb on + strandat 3935.696 kb on - strandat 3935.696 kb on - strandat 3935.696 kb on - strandat 3935.696 kb on - strandat 3935.696 kb on - strandat 3935.696 kb on - strandat 3935.696 kb on - strandat 3935.737 kb on + strandat 3935.904 kb on - strand, within ECD_03737at 3935.996 kb on + strand, within ECD_03737at 3936.008 kb on + strand, within ECD_03737at 3936.008 kb on + strand, within ECD_03737at 3936.009 kb on - strand, within ECD_03737at 3936.009 kb on - strand, within ECD_03737at 3936.268 kb on + strand, within ECD_03737at 3936.506 kb on + strand, within ECD_03737at 3936.595 kb on - strand, within ECD_03737at 3936.796 kb on + strand, within ECD_03737at 3936.815 kb on + strand, within ECD_03737at 3936.888 kb on + strand, within ECD_03737at 3936.888 kb on + strand, within ECD_03737at 3936.938 kb on + strand, within ECD_03737at 3936.939 kb on - strand, within ECD_03737at 3936.975 kb on + strand, within ECD_03737at 3936.976 kb on - strand, within ECD_03737at 3937.225 kb on - strand, within ECD_03737at 3937.316 kb on + strand, within ECD_03737at 3937.316 kb on + strand, within ECD_03737at 3937.317 kb on - strand, within ECD_03737at 3937.326 kb on - strand, within ECD_03737at 3937.326 kb on - strand, within ECD_03737at 3937.326 kb on - strand, within ECD_03737at 3937.326 kb on - strand, within ECD_03737at 3937.329 kb on + strand, within ECD_03737at 3937.329 kb on + strand, within ECD_03737at 3937.330 kb on - strand, within ECD_03737at 3937.330 kb on - strand, within ECD_03737at 3937.409 kb on - strand, within ECD_03737at 3937.499 kb on + strand, within ECD_03737at 3937.500 kb on - strand, within ECD_03737at 3937.533 kb on + strand, within ECD_03737at 3937.533 kb on + strand, within ECD_03737at 3937.533 kb on + strand, within ECD_03737at 3937.534 kb on - strand, within ECD_03737at 3937.534 kb on - strand, within ECD_03737at 3937.534 kb on - strand, within ECD_03737at 3937.534 kb on - strand, within ECD_03737at 3937.534 kb on - strand, within ECD_03737at 3937.534 kb on - strand, within ECD_03737at 3937.577 kb on + strandat 3937.577 kb on + strandat 3937.614 kb on + strandat 3937.614 kb on + strandat 3937.614 kb on + strandat 3937.701 kb on - strandat 3937.701 kb on - strandat 3937.722 kb on + strandat 3937.759 kb on + strandat 3937.759 kb on + strandat 3937.759 kb on + strandat 3937.778 kb on - strandat 3937.778 kb on - strandat 3937.778 kb on - strandat 3937.947 kb on - strandat 3937.998 kb on - strandat 3938.008 kb on + strandat 3938.008 kb on + strandat 3938.008 kb on + strandat 3938.008 kb on + strandat 3938.008 kb on + strandat 3938.012 kb on + strandat 3938.012 kb on + strandat 3938.012 kb on + strandat 3938.012 kb on + strandat 3938.012 kb on + strandat 3938.013 kb on - strandat 3938.066 kb on - strandat 3938.069 kb on + strandat 3938.069 kb on + strandat 3938.070 kb on - strandat 3938.070 kb on - strandat 3938.159 kb on - strand, within ECD_03738at 3938.220 kb on + strand, within ECD_03738at 3938.221 kb on - strand, within ECD_03738at 3938.355 kb on + strand, within ECD_03738at 3938.355 kb on + strand, within ECD_03738at 3938.356 kb on - strand, within ECD_03738at 3938.442 kb on + strand, within ECD_03738at 3938.442 kb on + strand, within ECD_03738at 3938.443 kb on - strand, within ECD_03738at 3938.443 kb on - strand, within ECD_03738at 3938.443 kb on - strand, within ECD_03738at 3938.467 kb on - strand, within ECD_03738at 3938.575 kb on - strand, within ECD_03738at 3938.608 kb on + strand, within ECD_03738at 3938.608 kb on + strand, within ECD_03738at 3938.608 kb on + strand, within ECD_03738at 3938.609 kb on - strand, within ECD_03738at 3938.609 kb on - strand, within ECD_03738at 3938.613 kb on + strand, within ECD_03738at 3938.613 kb on + strand, within ECD_03738at 3938.613 kb on + strand, within ECD_03738at 3938.613 kb on + strand, within ECD_03738at 3938.614 kb on - strand, within ECD_03738at 3938.614 kb on - strand, within ECD_03738at 3938.614 kb on - strand, within ECD_03738at 3938.658 kb on + strand, within ECD_03738at 3938.659 kb on - strand, within ECD_03738at 3938.659 kb on - strand, within ECD_03738at 3938.724 kb on + strand, within ECD_03738at 3938.725 kb on - strand, within ECD_03738at 3938.782 kb on - strand, within ECD_03738at 3938.782 kb on - strand, within ECD_03738

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
3,934,628 + ECD_03736 0.18 -0.4
3,934,631 + ECD_03736 0.18 -1.1
3,934,810 - ECD_03736 0.33 -0.7
3,934,810 - ECD_03736 0.33 -0.1
3,934,877 + ECD_03736 0.39 -0.8
3,934,878 - ECD_03736 0.39 -0.7
3,934,892 + ECD_03736 0.40 +0.8
3,935,118 - ECD_03736 0.60 -0.3
3,935,118 - ECD_03736 0.60 -0.0
3,935,118 - ECD_03736 0.60 -0.2
3,935,140 - ECD_03736 0.62 -0.4
3,935,226 - ECD_03736 0.69 +0.9
3,935,226 - ECD_03736 0.69 -0.1
3,935,292 + ECD_03736 0.75 -0.6
3,935,292 + ECD_03736 0.75 +0.8
3,935,292 + ECD_03736 0.75 -1.2
3,935,292 + ECD_03736 0.75 +0.5
3,935,292 + ECD_03736 0.75 -0.6
3,935,292 + ECD_03736 0.75 +0.2
3,935,293 - ECD_03736 0.75 -0.2
3,935,293 - ECD_03736 0.75 -0.2
3,935,293 - ECD_03736 0.75 -0.1
3,935,293 - ECD_03736 0.75 -0.0
3,935,293 - ECD_03736 0.75 -0.4
3,935,293 - ECD_03736 0.75 -0.7
3,935,385 - ECD_03736 0.83 -0.2
3,935,387 + ECD_03736 0.83 +0.1
3,935,387 + ECD_03736 0.83 -0.6
3,935,387 + ECD_03736 0.83 -0.4
3,935,387 + ECD_03736 0.83 -0.6
3,935,388 - ECD_03736 0.83 +0.3
3,935,413 - ECD_03736 0.85 -0.1
3,935,413 - ECD_03736 0.85 +0.7
3,935,484 + -0.3
3,935,596 + +0.1
3,935,645 - -0.5
3,935,647 + +0.3
3,935,695 + +0.5
3,935,695 + -0.3
3,935,695 + -0.3
3,935,696 - -0.5
3,935,696 - +0.1
3,935,696 - -0.6
3,935,696 - +0.0
3,935,696 - -0.1
3,935,696 - +1.1
3,935,696 - +0.3
3,935,737 + +0.3
3,935,904 - ECD_03737 0.14 +0.8
3,935,996 + ECD_03737 0.18 -0.3
3,936,008 + ECD_03737 0.19 -0.5
3,936,008 + ECD_03737 0.19 -0.9
3,936,009 - ECD_03737 0.19 -0.1
3,936,009 - ECD_03737 0.19 -0.0
3,936,268 + ECD_03737 0.31 -0.2
3,936,506 + ECD_03737 0.42 +0.4
3,936,595 - ECD_03737 0.46 +0.2
3,936,796 + ECD_03737 0.55 +0.0
3,936,815 + ECD_03737 0.56 -1.1
3,936,888 + ECD_03737 0.59 +0.4
3,936,888 + ECD_03737 0.59 +0.5
3,936,938 + ECD_03737 0.61 -0.2
3,936,939 - ECD_03737 0.61 -0.1
3,936,975 + ECD_03737 0.63 -0.3
3,936,976 - ECD_03737 0.63 -0.3
3,937,225 - ECD_03737 0.74 -0.0
3,937,316 + ECD_03737 0.79 -0.4
3,937,316 + ECD_03737 0.79 +0.2
3,937,317 - ECD_03737 0.79 -0.0
3,937,326 - ECD_03737 0.79 -0.3
3,937,326 - ECD_03737 0.79 -0.3
3,937,326 - ECD_03737 0.79 +0.9
3,937,326 - ECD_03737 0.79 -0.9
3,937,329 + ECD_03737 0.79 +0.0
3,937,329 + ECD_03737 0.79 +0.7
3,937,330 - ECD_03737 0.79 +0.1
3,937,330 - ECD_03737 0.79 +0.2
3,937,409 - ECD_03737 0.83 +0.0
3,937,499 + ECD_03737 0.87 +0.4
3,937,500 - ECD_03737 0.87 -1.1
3,937,533 + ECD_03737 0.88 -0.4
3,937,533 + ECD_03737 0.88 +0.0
3,937,533 + ECD_03737 0.88 -2.3
3,937,534 - ECD_03737 0.89 -0.1
3,937,534 - ECD_03737 0.89 -0.5
3,937,534 - ECD_03737 0.89 +0.2
3,937,534 - ECD_03737 0.89 +0.3
3,937,534 - ECD_03737 0.89 +0.1
3,937,534 - ECD_03737 0.89 +2.2
3,937,577 + +0.3
3,937,577 + +0.1
3,937,614 + +0.1
3,937,614 + +0.0
3,937,614 + -0.3
3,937,701 - -0.9
3,937,701 - +0.1
3,937,722 + +0.2
3,937,759 + -0.7
3,937,759 + +0.6
3,937,759 + -0.0
3,937,778 - +0.3
3,937,778 - +0.6
3,937,778 - +0.1
3,937,947 - +1.6
3,937,998 - +0.6
3,938,008 + +1.6
3,938,008 + -0.0
3,938,008 + -0.7
3,938,008 + +0.1
3,938,008 + +0.7
3,938,012 + -1.2
3,938,012 + +0.1
3,938,012 + -0.1
3,938,012 + -0.7
3,938,012 + -0.3
3,938,013 - -0.3
3,938,066 - +1.2
3,938,069 + -1.2
3,938,069 + +0.7
3,938,070 - -0.3
3,938,070 - +0.5
3,938,159 - ECD_03738 0.14 -1.3
3,938,220 + ECD_03738 0.18 +0.2
3,938,221 - ECD_03738 0.19 -1.0
3,938,355 + ECD_03738 0.29 -0.2
3,938,355 + ECD_03738 0.29 +1.3
3,938,356 - ECD_03738 0.29 +0.1
3,938,442 + ECD_03738 0.35 +0.5
3,938,442 + ECD_03738 0.35 +1.3
3,938,443 - ECD_03738 0.35 -0.7
3,938,443 - ECD_03738 0.35 -0.1
3,938,443 - ECD_03738 0.35 -0.2
3,938,467 - ECD_03738 0.37 +0.7
3,938,575 - ECD_03738 0.45 +0.7
3,938,608 + ECD_03738 0.48 -0.3
3,938,608 + ECD_03738 0.48 -0.7
3,938,608 + ECD_03738 0.48 +0.4
3,938,609 - ECD_03738 0.48 +1.0
3,938,609 - ECD_03738 0.48 -0.3
3,938,613 + ECD_03738 0.48 +0.6
3,938,613 + ECD_03738 0.48 -0.3
3,938,613 + ECD_03738 0.48 +0.1
3,938,613 + ECD_03738 0.48 -0.1
3,938,614 - ECD_03738 0.48 -0.3
3,938,614 - ECD_03738 0.48 -0.1
3,938,614 - ECD_03738 0.48 -0.7
3,938,658 + ECD_03738 0.51 +0.2
3,938,659 - ECD_03738 0.51 -0.1
3,938,659 - ECD_03738 0.51 -1.0
3,938,724 + ECD_03738 0.56 -0.7
3,938,725 - ECD_03738 0.56 -0.0
3,938,782 - ECD_03738 0.61 +0.5
3,938,782 - ECD_03738 0.61 +1.4

Or see this region's nucleotide sequence