Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03725 and ECD_03726 are separated by 94 nucleotides ECD_03726 and ECD_03727 are separated by 13 nucleotides ECD_03727 and ECD_03728 overlap by 4 nucleotides
ECD_03725: ECD_03725 - DNA recombination protein, at 3,924,244 to 3,925,671
_03725
ECD_03726: ECD_03726 - bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase, at 3,925,766 to 3,926,521
_03726
ECD_03727: ECD_03727 - aerobic ubiquinone synthesis protein, SCP2 family protein, at 3,926,535 to 3,927,140
_03727
ECD_03728: ECD_03728 - regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'-N-acetyltransferase; putative ABC1 family protein kinase, at 3,927,137 to 3,928,777
_03728
Position (kb)
3926
3927
3928 Strain fitness (log2 ratio)
-1
0
1 at 3925.592 kb on - strand at 3925.633 kb on + strand at 3925.633 kb on + strand at 3925.634 kb on - strand at 3925.634 kb on - strand at 3925.653 kb on + strand at 3925.653 kb on + strand at 3925.653 kb on + strand at 3925.654 kb on - strand at 3925.654 kb on - strand at 3925.654 kb on - strand at 3925.684 kb on - strand at 3926.512 kb on + strand at 3926.512 kb on + strand at 3926.512 kb on + strand at 3926.512 kb on + strand at 3926.641 kb on + strand, within ECD_03727 at 3926.656 kb on + strand, within ECD_03727 at 3926.710 kb on + strand, within ECD_03727 at 3926.912 kb on + strand, within ECD_03727 at 3927.032 kb on + strand, within ECD_03727
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,925,592 - +0.7 3,925,633 + +1.3 3,925,633 + +0.3 3,925,634 - -0.1 3,925,634 - +0.6 3,925,653 + -0.2 3,925,653 + -0.2 3,925,653 + +0.3 3,925,654 - +0.1 3,925,654 - +0.0 3,925,654 - +0.5 3,925,684 - -0.1 3,926,512 + +1.6 3,926,512 + -0.2 3,926,512 + +0.5 3,926,512 + -0.2 3,926,641 + ECD_03727 0.17 +1.3 3,926,656 + ECD_03727 0.20 +0.4 3,926,710 + ECD_03727 0.29 -0.8 3,926,912 + ECD_03727 0.62 +1.6 3,927,032 + ECD_03727 0.82 +0.8
Or see this region's nucleotide sequence