Strain Fitness in Escherichia coli BL21 around ECD_03668

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03666 and ECD_03667 are separated by 18 nucleotidesECD_03667 and ECD_03668 overlap by 23 nucleotidesECD_03668 and ECD_03669 are separated by 4 nucleotides ECD_03666: ECD_03666 - dTDP-glucose 4,6-dehydratase, at 3,862,762 to 3,863,829 _03666 ECD_03667: ECD_03667 - glucose-1-phosphate thymidylyltransferase, at 3,863,848 to 3,864,729 _03667 ECD_03668: ECD_03668 - TDP-fucosamine acetyltransferase, at 3,864,707 to 3,865,381 _03668 ECD_03669: ECD_03669 - TDP-4-oxo-6-deoxy-D-glucose transaminase, at 3,865,386 to 3,866,516 _03669 Position (kb) 3864 3865 3866Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3863.736 kb on + strandat 3863.736 kb on + strandat 3863.797 kb on + strandat 3863.813 kb on + strandat 3863.856 kb on + strandat 3863.856 kb on + strandat 3863.950 kb on + strand, within ECD_03667at 3863.951 kb on - strand, within ECD_03667at 3864.018 kb on + strand, within ECD_03667at 3864.019 kb on - strand, within ECD_03667at 3864.051 kb on + strand, within ECD_03667at 3864.076 kb on + strand, within ECD_03667at 3864.382 kb on - strand, within ECD_03667at 3864.439 kb on - strand, within ECD_03667at 3864.439 kb on - strand, within ECD_03667at 3864.457 kb on + strand, within ECD_03667at 3864.458 kb on - strand, within ECD_03667at 3864.557 kb on + strand, within ECD_03667at 3864.557 kb on + strand, within ECD_03667at 3864.785 kb on - strand, within ECD_03668at 3864.983 kb on - strand, within ECD_03668at 3865.074 kb on - strand, within ECD_03668at 3865.074 kb on - strand, within ECD_03668at 3865.074 kb on - strand, within ECD_03668at 3865.074 kb on - strand, within ECD_03668at 3865.132 kb on - strand, within ECD_03668at 3865.161 kb on - strand, within ECD_03668at 3865.263 kb on - strand, within ECD_03668at 3865.263 kb on - strand, within ECD_03668at 3865.332 kb on + strandat 3865.332 kb on + strandat 3865.333 kb on - strandat 3865.333 kb on - strandat 3865.333 kb on - strandat 3865.431 kb on + strandat 3865.431 kb on + strandat 3865.431 kb on + strandat 3865.431 kb on + strandat 3865.431 kb on + strandat 3865.431 kb on + strandat 3865.433 kb on + strandat 3865.433 kb on + strandat 3865.434 kb on - strandat 3865.434 kb on - strandat 3865.434 kb on - strandat 3865.535 kb on - strand, within ECD_03669at 3865.621 kb on - strand, within ECD_03669at 3865.834 kb on + strand, within ECD_03669at 3865.866 kb on + strand, within ECD_03669at 3865.910 kb on + strand, within ECD_03669at 3866.051 kb on + strand, within ECD_03669at 3866.055 kb on + strand, within ECD_03669at 3866.056 kb on - strand, within ECD_03669at 3866.057 kb on + strand, within ECD_03669at 3866.058 kb on - strand, within ECD_03669at 3866.069 kb on + strand, within ECD_03669at 3866.083 kb on - strand, within ECD_03669at 3866.083 kb on - strand, within ECD_03669at 3866.176 kb on - strand, within ECD_03669at 3866.178 kb on + strand, within ECD_03669at 3866.283 kb on - strand, within ECD_03669at 3866.307 kb on - strand, within ECD_03669

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,863,736 + +0.2
3,863,736 + +0.1
3,863,797 + -1.5
3,863,813 + +0.6
3,863,856 + +0.8
3,863,856 + +0.5
3,863,950 + ECD_03667 0.12 +0.4
3,863,951 - ECD_03667 0.12 +0.3
3,864,018 + ECD_03667 0.19 +0.3
3,864,019 - ECD_03667 0.19 +2.0
3,864,051 + ECD_03667 0.23 -0.2
3,864,076 + ECD_03667 0.26 +0.7
3,864,382 - ECD_03667 0.61 -0.8
3,864,439 - ECD_03667 0.67 +1.1
3,864,439 - ECD_03667 0.67 +0.7
3,864,457 + ECD_03667 0.69 +0.1
3,864,458 - ECD_03667 0.69 +1.1
3,864,557 + ECD_03667 0.80 +0.3
3,864,557 + ECD_03667 0.80 +0.8
3,864,785 - ECD_03668 0.12 +0.7
3,864,983 - ECD_03668 0.41 +0.7
3,865,074 - ECD_03668 0.54 +0.8
3,865,074 - ECD_03668 0.54 +1.6
3,865,074 - ECD_03668 0.54 +0.5
3,865,074 - ECD_03668 0.54 +0.9
3,865,132 - ECD_03668 0.63 +0.8
3,865,161 - ECD_03668 0.67 +0.6
3,865,263 - ECD_03668 0.82 -0.8
3,865,263 - ECD_03668 0.82 +1.2
3,865,332 + -0.0
3,865,332 + +1.6
3,865,333 - +1.6
3,865,333 - -0.8
3,865,333 - +0.7
3,865,431 + +0.7
3,865,431 + +0.2
3,865,431 + -0.4
3,865,431 + +0.1
3,865,431 + -0.8
3,865,431 + +1.7
3,865,433 + +0.8
3,865,433 + +0.9
3,865,434 - -0.2
3,865,434 - -0.8
3,865,434 - +1.3
3,865,535 - ECD_03669 0.13 +0.6
3,865,621 - ECD_03669 0.21 +0.6
3,865,834 + ECD_03669 0.40 -0.7
3,865,866 + ECD_03669 0.42 +0.3
3,865,910 + ECD_03669 0.46 -0.3
3,866,051 + ECD_03669 0.59 +2.9
3,866,055 + ECD_03669 0.59 +1.2
3,866,056 - ECD_03669 0.59 +0.7
3,866,057 + ECD_03669 0.59 +0.6
3,866,058 - ECD_03669 0.59 +0.3
3,866,069 + ECD_03669 0.60 -1.8
3,866,083 - ECD_03669 0.62 +0.4
3,866,083 - ECD_03669 0.62 -0.2
3,866,176 - ECD_03669 0.70 +1.6
3,866,178 + ECD_03669 0.70 -0.8
3,866,283 - ECD_03669 0.79 +0.6
3,866,307 - ECD_03669 0.81 +0.1

Or see this region's nucleotide sequence