Strain Fitness in Escherichia coli BL21 around ECD_03667

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03666 and ECD_03667 are separated by 18 nucleotidesECD_03667 and ECD_03668 overlap by 23 nucleotidesECD_03668 and ECD_03669 are separated by 4 nucleotides ECD_03666: ECD_03666 - dTDP-glucose 4,6-dehydratase, at 3,862,762 to 3,863,829 _03666 ECD_03667: ECD_03667 - glucose-1-phosphate thymidylyltransferase, at 3,863,848 to 3,864,729 _03667 ECD_03668: ECD_03668 - TDP-fucosamine acetyltransferase, at 3,864,707 to 3,865,381 _03668 ECD_03669: ECD_03669 - TDP-4-oxo-6-deoxy-D-glucose transaminase, at 3,865,386 to 3,866,516 _03669 Position (kb) 3863 3864 3865Strain fitness (log2 ratio) -1 0 1 2 3at 3862.871 kb on - strand, within ECD_03666at 3863.077 kb on + strand, within ECD_03666at 3863.077 kb on + strand, within ECD_03666at 3863.078 kb on - strand, within ECD_03666at 3863.079 kb on + strand, within ECD_03666at 3863.079 kb on + strand, within ECD_03666at 3863.079 kb on + strand, within ECD_03666at 3863.079 kb on + strand, within ECD_03666at 3863.080 kb on - strand, within ECD_03666at 3863.080 kb on - strand, within ECD_03666at 3863.080 kb on - strand, within ECD_03666at 3863.104 kb on + strand, within ECD_03666at 3863.154 kb on + strand, within ECD_03666at 3863.154 kb on + strand, within ECD_03666at 3863.154 kb on + strand, within ECD_03666at 3863.154 kb on + strand, within ECD_03666at 3863.154 kb on + strand, within ECD_03666at 3863.155 kb on - strand, within ECD_03666at 3863.171 kb on + strand, within ECD_03666at 3863.171 kb on + strand, within ECD_03666at 3863.171 kb on + strand, within ECD_03666at 3863.171 kb on + strand, within ECD_03666at 3863.171 kb on + strand, within ECD_03666at 3863.172 kb on - strand, within ECD_03666at 3863.173 kb on + strand, within ECD_03666at 3863.173 kb on + strand, within ECD_03666at 3863.173 kb on + strand, within ECD_03666at 3863.174 kb on - strand, within ECD_03666at 3863.239 kb on + strand, within ECD_03666at 3863.293 kb on + strand, within ECD_03666at 3863.294 kb on - strand, within ECD_03666at 3863.310 kb on + strand, within ECD_03666at 3863.311 kb on - strand, within ECD_03666at 3863.329 kb on - strand, within ECD_03666at 3863.332 kb on + strand, within ECD_03666at 3863.332 kb on + strand, within ECD_03666at 3863.332 kb on + strand, within ECD_03666at 3863.332 kb on + strand, within ECD_03666at 3863.332 kb on + strand, within ECD_03666at 3863.333 kb on - strand, within ECD_03666at 3863.408 kb on + strand, within ECD_03666at 3863.408 kb on + strand, within ECD_03666at 3863.408 kb on + strand, within ECD_03666at 3863.408 kb on + strand, within ECD_03666at 3863.410 kb on + strand, within ECD_03666at 3863.443 kb on + strand, within ECD_03666at 3863.443 kb on + strand, within ECD_03666at 3863.444 kb on - strand, within ECD_03666at 3863.470 kb on + strand, within ECD_03666at 3863.471 kb on - strand, within ECD_03666at 3863.507 kb on - strand, within ECD_03666at 3863.508 kb on + strand, within ECD_03666at 3863.508 kb on + strand, within ECD_03666at 3863.511 kb on + strand, within ECD_03666at 3863.511 kb on + strand, within ECD_03666at 3863.512 kb on - strand, within ECD_03666at 3863.512 kb on - strand, within ECD_03666at 3863.512 kb on - strand, within ECD_03666at 3863.532 kb on + strand, within ECD_03666at 3863.612 kb on - strand, within ECD_03666at 3863.612 kb on - strand, within ECD_03666at 3863.612 kb on - strand, within ECD_03666at 3863.613 kb on + strand, within ECD_03666at 3863.614 kb on - strand, within ECD_03666at 3863.736 kb on + strandat 3863.736 kb on + strandat 3863.797 kb on + strandat 3863.813 kb on + strandat 3863.856 kb on + strandat 3863.856 kb on + strandat 3863.950 kb on + strand, within ECD_03667at 3863.951 kb on - strand, within ECD_03667at 3864.018 kb on + strand, within ECD_03667at 3864.019 kb on - strand, within ECD_03667at 3864.051 kb on + strand, within ECD_03667at 3864.076 kb on + strand, within ECD_03667at 3864.382 kb on - strand, within ECD_03667at 3864.439 kb on - strand, within ECD_03667at 3864.439 kb on - strand, within ECD_03667at 3864.457 kb on + strand, within ECD_03667at 3864.458 kb on - strand, within ECD_03667at 3864.557 kb on + strand, within ECD_03667at 3864.557 kb on + strand, within ECD_03667at 3864.785 kb on - strand, within ECD_03668at 3864.983 kb on - strand, within ECD_03668at 3865.074 kb on - strand, within ECD_03668at 3865.074 kb on - strand, within ECD_03668at 3865.074 kb on - strand, within ECD_03668at 3865.074 kb on - strand, within ECD_03668at 3865.132 kb on - strand, within ECD_03668at 3865.161 kb on - strand, within ECD_03668at 3865.263 kb on - strand, within ECD_03668at 3865.263 kb on - strand, within ECD_03668at 3865.332 kb on + strandat 3865.332 kb on + strandat 3865.333 kb on - strandat 3865.333 kb on - strandat 3865.333 kb on - strandat 3865.431 kb on + strandat 3865.431 kb on + strandat 3865.431 kb on + strandat 3865.431 kb on + strandat 3865.431 kb on + strandat 3865.431 kb on + strandat 3865.433 kb on + strandat 3865.433 kb on + strandat 3865.434 kb on - strandat 3865.434 kb on - strandat 3865.434 kb on - strandat 3865.535 kb on - strand, within ECD_03669at 3865.621 kb on - strand, within ECD_03669

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,862,871 - ECD_03666 0.10 +1.1
3,863,077 + ECD_03666 0.29 +0.7
3,863,077 + ECD_03666 0.29 -0.0
3,863,078 - ECD_03666 0.30 -0.1
3,863,079 + ECD_03666 0.30 +0.8
3,863,079 + ECD_03666 0.30 +0.8
3,863,079 + ECD_03666 0.30 +0.2
3,863,079 + ECD_03666 0.30 -0.0
3,863,080 - ECD_03666 0.30 +0.2
3,863,080 - ECD_03666 0.30 +0.1
3,863,080 - ECD_03666 0.30 -0.6
3,863,104 + ECD_03666 0.32 -0.7
3,863,154 + ECD_03666 0.37 +0.6
3,863,154 + ECD_03666 0.37 +1.6
3,863,154 + ECD_03666 0.37 +0.4
3,863,154 + ECD_03666 0.37 -0.1
3,863,154 + ECD_03666 0.37 +0.4
3,863,155 - ECD_03666 0.37 +0.4
3,863,171 + ECD_03666 0.38 +0.1
3,863,171 + ECD_03666 0.38 +0.5
3,863,171 + ECD_03666 0.38 +0.3
3,863,171 + ECD_03666 0.38 -0.3
3,863,171 + ECD_03666 0.38 +0.7
3,863,172 - ECD_03666 0.38 +0.3
3,863,173 + ECD_03666 0.38 +0.9
3,863,173 + ECD_03666 0.38 +0.5
3,863,173 + ECD_03666 0.38 -0.6
3,863,174 - ECD_03666 0.39 +0.1
3,863,239 + ECD_03666 0.45 -0.2
3,863,293 + ECD_03666 0.50 +0.4
3,863,294 - ECD_03666 0.50 +0.5
3,863,310 + ECD_03666 0.51 -0.0
3,863,311 - ECD_03666 0.51 +0.7
3,863,329 - ECD_03666 0.53 +0.7
3,863,332 + ECD_03666 0.53 +0.1
3,863,332 + ECD_03666 0.53 -0.9
3,863,332 + ECD_03666 0.53 +0.6
3,863,332 + ECD_03666 0.53 -0.5
3,863,332 + ECD_03666 0.53 +3.2
3,863,333 - ECD_03666 0.53 +2.2
3,863,408 + ECD_03666 0.60 +0.6
3,863,408 + ECD_03666 0.60 +0.5
3,863,408 + ECD_03666 0.60 +0.3
3,863,408 + ECD_03666 0.60 +0.2
3,863,410 + ECD_03666 0.61 +0.5
3,863,443 + ECD_03666 0.64 +0.2
3,863,443 + ECD_03666 0.64 -0.3
3,863,444 - ECD_03666 0.64 -0.4
3,863,470 + ECD_03666 0.66 -0.0
3,863,471 - ECD_03666 0.66 +0.9
3,863,507 - ECD_03666 0.70 +1.4
3,863,508 + ECD_03666 0.70 +0.2
3,863,508 + ECD_03666 0.70 +0.3
3,863,511 + ECD_03666 0.70 +0.2
3,863,511 + ECD_03666 0.70 -0.3
3,863,512 - ECD_03666 0.70 -0.8
3,863,512 - ECD_03666 0.70 +1.1
3,863,512 - ECD_03666 0.70 +0.8
3,863,532 + ECD_03666 0.72 -0.2
3,863,612 - ECD_03666 0.80 +0.4
3,863,612 - ECD_03666 0.80 +1.0
3,863,612 - ECD_03666 0.80 -0.1
3,863,613 + ECD_03666 0.80 +0.0
3,863,614 - ECD_03666 0.80 +0.5
3,863,736 + +0.2
3,863,736 + +0.1
3,863,797 + -1.5
3,863,813 + +0.6
3,863,856 + +0.8
3,863,856 + +0.5
3,863,950 + ECD_03667 0.12 +0.4
3,863,951 - ECD_03667 0.12 +0.3
3,864,018 + ECD_03667 0.19 +0.3
3,864,019 - ECD_03667 0.19 +2.0
3,864,051 + ECD_03667 0.23 -0.2
3,864,076 + ECD_03667 0.26 +0.7
3,864,382 - ECD_03667 0.61 -0.8
3,864,439 - ECD_03667 0.67 +1.1
3,864,439 - ECD_03667 0.67 +0.7
3,864,457 + ECD_03667 0.69 +0.1
3,864,458 - ECD_03667 0.69 +1.1
3,864,557 + ECD_03667 0.80 +0.3
3,864,557 + ECD_03667 0.80 +0.8
3,864,785 - ECD_03668 0.12 +0.7
3,864,983 - ECD_03668 0.41 +0.7
3,865,074 - ECD_03668 0.54 +0.8
3,865,074 - ECD_03668 0.54 +1.6
3,865,074 - ECD_03668 0.54 +0.5
3,865,074 - ECD_03668 0.54 +0.9
3,865,132 - ECD_03668 0.63 +0.8
3,865,161 - ECD_03668 0.67 +0.6
3,865,263 - ECD_03668 0.82 -0.8
3,865,263 - ECD_03668 0.82 +1.2
3,865,332 + -0.0
3,865,332 + +1.6
3,865,333 - +1.6
3,865,333 - -0.8
3,865,333 - +0.7
3,865,431 + +0.7
3,865,431 + +0.2
3,865,431 + -0.4
3,865,431 + +0.1
3,865,431 + -0.8
3,865,431 + +1.7
3,865,433 + +0.8
3,865,433 + +0.9
3,865,434 - -0.2
3,865,434 - -0.8
3,865,434 - +1.3
3,865,535 - ECD_03669 0.13 +0.6
3,865,621 - ECD_03669 0.21 +0.6

Or see this region's nucleotide sequence