Strain Fitness in Escherichia coli BL21 around ECD_03458

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03456 and ECD_03457 are separated by 11 nucleotidesECD_03457 and ECD_03458 are separated by 284 nucleotidesECD_03458 and ECD_03459 are separated by 543 nucleotides ECD_03456: ECD_03456 - mannitol operon repressor, at 3,638,700 to 3,639,287 _03456 ECD_03457: ECD_03457 - uncharacterized protein, at 3,639,299 to 3,639,508 _03457 ECD_03458: ECD_03458 - ribosome-associated DUF2810 family protein, at 3,639,793 to 3,640,155 _03458 ECD_03459: ECD_03459 - hypothetical protein, at 3,640,699 to 3,641,382 _03459 Position (kb) 3639 3640 3641Strain fitness (log2 ratio) -2 -1 0 1at 3638.919 kb on + strand, within ECD_03456at 3638.919 kb on + strand, within ECD_03456at 3638.919 kb on + strand, within ECD_03456at 3638.920 kb on - strand, within ECD_03456at 3638.920 kb on - strand, within ECD_03456at 3638.920 kb on - strand, within ECD_03456at 3638.977 kb on + strand, within ECD_03456at 3639.018 kb on + strand, within ECD_03456at 3639.286 kb on - strandat 3639.300 kb on + strandat 3639.300 kb on + strandat 3639.339 kb on + strand, within ECD_03457at 3639.340 kb on - strand, within ECD_03457at 3639.342 kb on + strand, within ECD_03457at 3639.356 kb on + strand, within ECD_03457at 3639.356 kb on + strand, within ECD_03457at 3639.357 kb on - strand, within ECD_03457at 3639.357 kb on - strand, within ECD_03457at 3639.360 kb on + strand, within ECD_03457at 3639.360 kb on + strand, within ECD_03457at 3639.361 kb on - strand, within ECD_03457at 3639.361 kb on - strand, within ECD_03457at 3639.362 kb on + strand, within ECD_03457at 3639.362 kb on + strand, within ECD_03457at 3639.362 kb on + strand, within ECD_03457at 3639.363 kb on - strand, within ECD_03457at 3639.426 kb on + strand, within ECD_03457at 3639.515 kb on - strandat 3639.515 kb on - strandat 3639.559 kb on - strandat 3639.633 kb on - strandat 3639.697 kb on + strandat 3639.697 kb on + strandat 3639.713 kb on + strandat 3639.713 kb on + strandat 3639.754 kb on - strandat 3639.764 kb on - strandat 3639.771 kb on + strandat 3639.772 kb on - strandat 3639.777 kb on + strandat 3639.895 kb on + strand, within ECD_03458at 3639.896 kb on - strand, within ECD_03458at 3640.020 kb on + strand, within ECD_03458at 3640.021 kb on - strand, within ECD_03458at 3640.154 kb on - strandat 3640.173 kb on + strandat 3640.174 kb on - strandat 3640.174 kb on - strandat 3640.182 kb on - strandat 3640.268 kb on - strandat 3640.268 kb on - strandat 3640.278 kb on - strandat 3640.795 kb on - strand, within ECD_03459

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,638,919 + ECD_03456 0.37 +0.2
3,638,919 + ECD_03456 0.37 -0.1
3,638,919 + ECD_03456 0.37 +0.1
3,638,920 - ECD_03456 0.37 +0.5
3,638,920 - ECD_03456 0.37 +1.1
3,638,920 - ECD_03456 0.37 +1.0
3,638,977 + ECD_03456 0.47 -0.2
3,639,018 + ECD_03456 0.54 -0.0
3,639,286 - -0.0
3,639,300 + -0.5
3,639,300 + +0.2
3,639,339 + ECD_03457 0.19 +0.4
3,639,340 - ECD_03457 0.20 -0.9
3,639,342 + ECD_03457 0.20 -0.2
3,639,356 + ECD_03457 0.27 -0.3
3,639,356 + ECD_03457 0.27 +0.1
3,639,357 - ECD_03457 0.28 -0.4
3,639,357 - ECD_03457 0.28 -0.5
3,639,360 + ECD_03457 0.29 -0.3
3,639,360 + ECD_03457 0.29 +0.7
3,639,361 - ECD_03457 0.30 -0.3
3,639,361 - ECD_03457 0.30 -0.4
3,639,362 + ECD_03457 0.30 -0.2
3,639,362 + ECD_03457 0.30 +0.6
3,639,362 + ECD_03457 0.30 +1.2
3,639,363 - ECD_03457 0.30 -1.0
3,639,426 + ECD_03457 0.60 +0.0
3,639,515 - -0.2
3,639,515 - -0.0
3,639,559 - +1.0
3,639,633 - -0.8
3,639,697 + +0.5
3,639,697 + -0.3
3,639,713 + +0.8
3,639,713 + +0.1
3,639,754 - +0.6
3,639,764 - -1.1
3,639,771 + +1.0
3,639,772 - +0.2
3,639,777 + +0.0
3,639,895 + ECD_03458 0.28 -0.5
3,639,896 - ECD_03458 0.28 -0.5
3,640,020 + ECD_03458 0.63 -0.0
3,640,021 - ECD_03458 0.63 -1.2
3,640,154 - +0.2
3,640,173 + -1.8
3,640,174 - +1.1
3,640,174 - +0.2
3,640,182 - +0.1
3,640,268 - +1.0
3,640,268 - -0.4
3,640,278 - -0.3
3,640,795 - ECD_03459 0.14 +0.6

Or see this region's nucleotide sequence