Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03456 and ECD_03457 are separated by 11 nucleotides ECD_03457 and ECD_03458 are separated by 284 nucleotides ECD_03458 and ECD_03459 are separated by 543 nucleotides
ECD_03456: ECD_03456 - mannitol operon repressor, at 3,638,700 to 3,639,287
_03456
ECD_03457: ECD_03457 - uncharacterized protein, at 3,639,299 to 3,639,508
_03457
ECD_03458: ECD_03458 - ribosome-associated DUF2810 family protein, at 3,639,793 to 3,640,155
_03458
ECD_03459: ECD_03459 - hypothetical protein, at 3,640,699 to 3,641,382
_03459
Position (kb)
3639
3640
3641 Strain fitness (log2 ratio)
-2
-1
0
1 at 3638.919 kb on + strand, within ECD_03456 at 3638.919 kb on + strand, within ECD_03456 at 3638.919 kb on + strand, within ECD_03456 at 3638.920 kb on - strand, within ECD_03456 at 3638.920 kb on - strand, within ECD_03456 at 3638.920 kb on - strand, within ECD_03456 at 3638.977 kb on + strand, within ECD_03456 at 3639.018 kb on + strand, within ECD_03456 at 3639.286 kb on - strand at 3639.300 kb on + strand at 3639.300 kb on + strand at 3639.339 kb on + strand, within ECD_03457 at 3639.340 kb on - strand, within ECD_03457 at 3639.342 kb on + strand, within ECD_03457 at 3639.356 kb on + strand, within ECD_03457 at 3639.356 kb on + strand, within ECD_03457 at 3639.357 kb on - strand, within ECD_03457 at 3639.357 kb on - strand, within ECD_03457 at 3639.360 kb on + strand, within ECD_03457 at 3639.360 kb on + strand, within ECD_03457 at 3639.361 kb on - strand, within ECD_03457 at 3639.361 kb on - strand, within ECD_03457 at 3639.362 kb on + strand, within ECD_03457 at 3639.362 kb on + strand, within ECD_03457 at 3639.362 kb on + strand, within ECD_03457 at 3639.363 kb on - strand, within ECD_03457 at 3639.426 kb on + strand, within ECD_03457 at 3639.515 kb on - strand at 3639.515 kb on - strand at 3639.559 kb on - strand at 3639.633 kb on - strand at 3639.697 kb on + strand at 3639.697 kb on + strand at 3639.713 kb on + strand at 3639.713 kb on + strand at 3639.754 kb on - strand at 3639.764 kb on - strand at 3639.771 kb on + strand at 3639.772 kb on - strand at 3639.777 kb on + strand at 3639.895 kb on + strand, within ECD_03458 at 3639.896 kb on - strand, within ECD_03458 at 3640.020 kb on + strand, within ECD_03458 at 3640.021 kb on - strand, within ECD_03458 at 3640.154 kb on - strand at 3640.173 kb on + strand at 3640.174 kb on - strand at 3640.174 kb on - strand at 3640.182 kb on - strand at 3640.268 kb on - strand at 3640.268 kb on - strand at 3640.278 kb on - strand at 3640.795 kb on - strand, within ECD_03459
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,638,919 + ECD_03456 0.37 +0.2 3,638,919 + ECD_03456 0.37 -0.1 3,638,919 + ECD_03456 0.37 +0.1 3,638,920 - ECD_03456 0.37 +0.5 3,638,920 - ECD_03456 0.37 +1.1 3,638,920 - ECD_03456 0.37 +1.0 3,638,977 + ECD_03456 0.47 -0.2 3,639,018 + ECD_03456 0.54 -0.0 3,639,286 - -0.0 3,639,300 + -0.5 3,639,300 + +0.2 3,639,339 + ECD_03457 0.19 +0.4 3,639,340 - ECD_03457 0.20 -0.9 3,639,342 + ECD_03457 0.20 -0.2 3,639,356 + ECD_03457 0.27 -0.3 3,639,356 + ECD_03457 0.27 +0.1 3,639,357 - ECD_03457 0.28 -0.4 3,639,357 - ECD_03457 0.28 -0.5 3,639,360 + ECD_03457 0.29 -0.3 3,639,360 + ECD_03457 0.29 +0.7 3,639,361 - ECD_03457 0.30 -0.3 3,639,361 - ECD_03457 0.30 -0.4 3,639,362 + ECD_03457 0.30 -0.2 3,639,362 + ECD_03457 0.30 +0.6 3,639,362 + ECD_03457 0.30 +1.2 3,639,363 - ECD_03457 0.30 -1.0 3,639,426 + ECD_03457 0.60 +0.0 3,639,515 - -0.2 3,639,515 - -0.0 3,639,559 - +1.0 3,639,633 - -0.8 3,639,697 + +0.5 3,639,697 + -0.3 3,639,713 + +0.8 3,639,713 + +0.1 3,639,754 - +0.6 3,639,764 - -1.1 3,639,771 + +1.0 3,639,772 - +0.2 3,639,777 + +0.0 3,639,895 + ECD_03458 0.28 -0.5 3,639,896 - ECD_03458 0.28 -0.5 3,640,020 + ECD_03458 0.63 -0.0 3,640,021 - ECD_03458 0.63 -1.2 3,640,154 - +0.2 3,640,173 + -1.8 3,640,174 - +1.1 3,640,174 - +0.2 3,640,182 - +0.1 3,640,268 - +1.0 3,640,268 - -0.4 3,640,278 - -0.3 3,640,795 - ECD_03459 0.14 +0.6
Or see this region's nucleotide sequence