Strain Fitness in Escherichia coli BL21 around ECD_03407

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03405 and ECD_03406 are separated by 280 nucleotidesECD_03406 and ECD_03407 are separated by 186 nucleotidesECD_03407 and ECD_03408 are separated by 79 nucleotidesECD_03408 and ECD_03409 overlap by 4 nucleotides ECD_03405: ECD_03405 - HTH_CROC1 family putative transcriptional regulator, at 3,581,632 to 3,581,922 _03405 ECD_03406: ECD_03406 - RNA chaperone and antiterminator, cold-inducible, at 3,582,203 to 3,582,415 _03406 ECD_03407: ECD_03407 - toxic polypeptide, small, at 3,582,602 to 3,582,754 _03407 ECD_03408: ECD_03408 - IS150 hypothetical protein, at 3,582,834 to 3,583,355 _03408 ECD_03409: ECD_03409 - IS150 putative transposase, at 3,583,352 to 3,584,203 _03409 Position (kb) 3582 3583Strain fitness (log2 ratio) -1 0 1at 3581.640 kb on + strandat 3581.640 kb on + strandat 3581.640 kb on + strandat 3581.640 kb on + strandat 3581.641 kb on - strandat 3581.641 kb on - strandat 3581.753 kb on + strand, within ECD_03405at 3581.754 kb on - strand, within ECD_03405at 3581.805 kb on - strand, within ECD_03405at 3581.904 kb on + strandat 3581.988 kb on + strandat 3581.989 kb on - strandat 3582.075 kb on + strandat 3582.075 kb on + strandat 3582.075 kb on + strandat 3582.075 kb on + strandat 3582.078 kb on + strandat 3582.118 kb on + strandat 3582.194 kb on + strandat 3582.194 kb on + strandat 3582.197 kb on + strandat 3582.197 kb on + strandat 3582.202 kb on + strandat 3582.202 kb on + strandat 3582.202 kb on + strandat 3582.424 kb on + strandat 3582.643 kb on - strand, within ECD_03407

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,581,640 + -0.1
3,581,640 + -0.1
3,581,640 + +0.8
3,581,640 + +1.6
3,581,641 - +0.2
3,581,641 - +0.2
3,581,753 + ECD_03405 0.42 +0.1
3,581,754 - ECD_03405 0.42 +0.6
3,581,805 - ECD_03405 0.59 +0.4
3,581,904 + -0.6
3,581,988 + -0.9
3,581,989 - +0.0
3,582,075 + -1.2
3,582,075 + +1.1
3,582,075 + +0.5
3,582,075 + +0.1
3,582,078 + +1.3
3,582,118 + +0.3
3,582,194 + -0.3
3,582,194 + -0.6
3,582,197 + -0.2
3,582,197 + +0.7
3,582,202 + +0.7
3,582,202 + -1.1
3,582,202 + +0.3
3,582,424 + +0.3
3,582,643 - ECD_03407 0.27 +0.7

Or see this region's nucleotide sequence