Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03405 and ECD_03406 are separated by 280 nucleotides ECD_03406 and ECD_03407 are separated by 186 nucleotides ECD_03407 and ECD_03408 are separated by 79 nucleotides ECD_03408 and ECD_03409 overlap by 4 nucleotides
ECD_03405: ECD_03405 - HTH_CROC1 family putative transcriptional regulator, at 3,581,632 to 3,581,922
_03405
ECD_03406: ECD_03406 - RNA chaperone and antiterminator, cold-inducible, at 3,582,203 to 3,582,415
_03406
ECD_03407: ECD_03407 - toxic polypeptide, small, at 3,582,602 to 3,582,754
_03407
ECD_03408: ECD_03408 - IS150 hypothetical protein, at 3,582,834 to 3,583,355
_03408
ECD_03409: ECD_03409 - IS150 putative transposase, at 3,583,352 to 3,584,203
_03409
Position (kb)
3582
3583 Strain fitness (log2 ratio)
-1
0
1 at 3581.640 kb on + strand at 3581.640 kb on + strand at 3581.640 kb on + strand at 3581.640 kb on + strand at 3581.641 kb on - strand at 3581.641 kb on - strand at 3581.753 kb on + strand, within ECD_03405 at 3581.754 kb on - strand, within ECD_03405 at 3581.805 kb on - strand, within ECD_03405 at 3581.904 kb on + strand at 3581.988 kb on + strand at 3581.989 kb on - strand at 3582.075 kb on + strand at 3582.075 kb on + strand at 3582.075 kb on + strand at 3582.075 kb on + strand at 3582.078 kb on + strand at 3582.118 kb on + strand at 3582.194 kb on + strand at 3582.194 kb on + strand at 3582.197 kb on + strand at 3582.197 kb on + strand at 3582.202 kb on + strand at 3582.202 kb on + strand at 3582.202 kb on + strand at 3582.424 kb on + strand at 3582.643 kb on - strand, within ECD_03407
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,581,640 + -0.1 3,581,640 + -0.1 3,581,640 + +0.8 3,581,640 + +1.6 3,581,641 - +0.2 3,581,641 - +0.2 3,581,753 + ECD_03405 0.42 +0.1 3,581,754 - ECD_03405 0.42 +0.6 3,581,805 - ECD_03405 0.59 +0.4 3,581,904 + -0.6 3,581,988 + -0.9 3,581,989 - +0.0 3,582,075 + -1.2 3,582,075 + +1.1 3,582,075 + +0.5 3,582,075 + +0.1 3,582,078 + +1.3 3,582,118 + +0.3 3,582,194 + -0.3 3,582,194 + -0.6 3,582,197 + -0.2 3,582,197 + +0.7 3,582,202 + +0.7 3,582,202 + -1.1 3,582,202 + +0.3 3,582,424 + +0.3 3,582,643 - ECD_03407 0.27 +0.7
Or see this region's nucleotide sequence