Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03355 and ECD_03356 are separated by 41 nucleotides ECD_03356 and ECD_03357 are separated by 63 nucleotides ECD_03357 and ECD_03358 are separated by 115 nucleotides ECD_03358 and ECD_03359 are separated by 254 nucleotides
ECD_03355: ECD_03355 - Putative LuxR family repressor for dicarboxylate transport, at 3,515,870 to 3,516,400
_03355
ECD_03356: ECD_03356 - putative Mg(2+) transport ATPase, inner membrane protein, at 3,516,442 to 3,517,089
_03356
ECD_03357: ECD_03357 - acid-resistance protein, at 3,517,153 to 3,517,479
_03357
ECD_03358: ECD_03358 - stress response protein acid-resistance protein, at 3,517,595 to 3,517,927
_03358
ECD_03359: ECD_03359 - acid-resistance membrane protein, at 3,518,182 to 3,518,754
_03359
Position (kb)
3517
3518 Strain fitness (log2 ratio)
-1
0
1 at 3516.369 kb on + strand at 3516.383 kb on - strand at 3516.447 kb on + strand at 3516.729 kb on - strand, within ECD_03356 at 3516.729 kb on - strand, within ECD_03356 at 3516.729 kb on - strand, within ECD_03356 at 3516.769 kb on + strand, within ECD_03356 at 3516.769 kb on + strand, within ECD_03356 at 3517.290 kb on - strand, within ECD_03357 at 3517.682 kb on - strand, within ECD_03358 at 3517.946 kb on - strand at 3518.007 kb on - strand at 3518.188 kb on + strand at 3518.196 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,516,369 + -0.0 3,516,383 - -0.1 3,516,447 + +0.6 3,516,729 - ECD_03356 0.44 +0.5 3,516,729 - ECD_03356 0.44 -0.2 3,516,729 - ECD_03356 0.44 -1.5 3,516,769 + ECD_03356 0.50 +0.6 3,516,769 + ECD_03356 0.50 -0.0 3,517,290 - ECD_03357 0.42 +0.6 3,517,682 - ECD_03358 0.26 -0.3 3,517,946 - +0.3 3,518,007 - +0.7 3,518,188 + -0.1 3,518,196 + +0.3
Or see this region's nucleotide sequence