Strain Fitness in Escherichia coli BL21 around ECD_03357

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03355 and ECD_03356 are separated by 41 nucleotidesECD_03356 and ECD_03357 are separated by 63 nucleotidesECD_03357 and ECD_03358 are separated by 115 nucleotidesECD_03358 and ECD_03359 are separated by 254 nucleotides ECD_03355: ECD_03355 - Putative LuxR family repressor for dicarboxylate transport, at 3,515,870 to 3,516,400 _03355 ECD_03356: ECD_03356 - putative Mg(2+) transport ATPase, inner membrane protein, at 3,516,442 to 3,517,089 _03356 ECD_03357: ECD_03357 - acid-resistance protein, at 3,517,153 to 3,517,479 _03357 ECD_03358: ECD_03358 - stress response protein acid-resistance protein, at 3,517,595 to 3,517,927 _03358 ECD_03359: ECD_03359 - acid-resistance membrane protein, at 3,518,182 to 3,518,754 _03359 Position (kb) 3517 3518Strain fitness (log2 ratio) -1 0 1at 3516.369 kb on + strandat 3516.383 kb on - strandat 3516.447 kb on + strandat 3516.729 kb on - strand, within ECD_03356at 3516.729 kb on - strand, within ECD_03356at 3516.729 kb on - strand, within ECD_03356at 3516.769 kb on + strand, within ECD_03356at 3516.769 kb on + strand, within ECD_03356at 3517.290 kb on - strand, within ECD_03357at 3517.682 kb on - strand, within ECD_03358at 3517.946 kb on - strandat 3518.007 kb on - strandat 3518.188 kb on + strandat 3518.196 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,516,369 + -0.0
3,516,383 - -0.1
3,516,447 + +0.6
3,516,729 - ECD_03356 0.44 +0.5
3,516,729 - ECD_03356 0.44 -0.2
3,516,729 - ECD_03356 0.44 -1.5
3,516,769 + ECD_03356 0.50 +0.6
3,516,769 + ECD_03356 0.50 -0.0
3,517,290 - ECD_03357 0.42 +0.6
3,517,682 - ECD_03358 0.26 -0.3
3,517,946 - +0.3
3,518,007 - +0.7
3,518,188 + -0.1
3,518,196 + +0.3

Or see this region's nucleotide sequence