Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03300 and ECD_03301 overlap by 4 nucleotides ECD_03301 and ECD_03302 are separated by 97 nucleotides ECD_03302 and ECD_03303 are separated by 396 nucleotides
ECD_03300: ECD_03300 - sn-glycerol-3-phosphate ABC transporter permease, at 3,451,554 to 3,452,399
_03300
ECD_03301: ECD_03301 - sn-glycerol-3-phosphate ABC transporter permease, at 3,452,396 to 3,453,283
_03301
ECD_03302: ECD_03302 - sn-glycerol-3-phosphate ABC transporter periplasmic binding protein, at 3,453,381 to 3,454,697
_03302
ECD_03303: ECD_03303 - branched-chain amino acid ABC transporter ATPase, at 3,455,094 to 3,455,807
_03303
Position (kb)
3453
3454
3455 Strain fitness (log2 ratio)
-2
-1
0
1 at 3452.424 kb on + strand at 3452.424 kb on + strand at 3452.425 kb on - strand at 3452.425 kb on - strand at 3452.425 kb on - strand at 3452.510 kb on - strand, within ECD_03301 at 3452.523 kb on + strand, within ECD_03301 at 3452.524 kb on - strand, within ECD_03301 at 3452.530 kb on + strand, within ECD_03301 at 3452.531 kb on - strand, within ECD_03301 at 3452.531 kb on - strand, within ECD_03301 at 3452.611 kb on - strand, within ECD_03301 at 3452.611 kb on - strand, within ECD_03301 at 3452.611 kb on - strand, within ECD_03301 at 3452.611 kb on - strand, within ECD_03301 at 3452.624 kb on + strand, within ECD_03301 at 3452.671 kb on + strand, within ECD_03301 at 3452.671 kb on + strand, within ECD_03301 at 3452.752 kb on - strand, within ECD_03301 at 3452.786 kb on + strand, within ECD_03301 at 3452.941 kb on - strand, within ECD_03301 at 3452.964 kb on + strand, within ECD_03301 at 3452.965 kb on - strand, within ECD_03301 at 3452.988 kb on + strand, within ECD_03301 at 3452.988 kb on + strand, within ECD_03301 at 3452.988 kb on + strand, within ECD_03301 at 3452.988 kb on + strand, within ECD_03301 at 3452.988 kb on + strand, within ECD_03301 at 3452.989 kb on - strand, within ECD_03301 at 3452.989 kb on - strand, within ECD_03301 at 3452.989 kb on - strand, within ECD_03301 at 3453.057 kb on - strand, within ECD_03301 at 3453.081 kb on + strand, within ECD_03301 at 3453.084 kb on + strand, within ECD_03301 at 3453.084 kb on + strand, within ECD_03301 at 3453.084 kb on + strand, within ECD_03301 at 3453.084 kb on + strand, within ECD_03301 at 3453.084 kb on + strand, within ECD_03301 at 3453.084 kb on + strand, within ECD_03301 at 3453.085 kb on - strand, within ECD_03301 at 3453.196 kb on + strand at 3453.206 kb on - strand at 3453.241 kb on - strand at 3453.284 kb on + strand at 3453.353 kb on - strand at 3453.374 kb on - strand at 3453.564 kb on - strand, within ECD_03302 at 3453.637 kb on + strand, within ECD_03302 at 3453.637 kb on + strand, within ECD_03302 at 3453.736 kb on + strand, within ECD_03302 at 3453.737 kb on - strand, within ECD_03302 at 3453.737 kb on - strand, within ECD_03302 at 3453.737 kb on - strand, within ECD_03302 at 3453.737 kb on - strand, within ECD_03302 at 3453.747 kb on - strand, within ECD_03302 at 3453.837 kb on + strand, within ECD_03302 at 3453.838 kb on - strand, within ECD_03302 at 3453.845 kb on - strand, within ECD_03302 at 3453.845 kb on - strand, within ECD_03302 at 3453.917 kb on + strand, within ECD_03302 at 3453.920 kb on - strand, within ECD_03302 at 3453.920 kb on - strand, within ECD_03302 at 3453.920 kb on - strand, within ECD_03302 at 3453.956 kb on - strand, within ECD_03302 at 3453.956 kb on - strand, within ECD_03302 at 3454.174 kb on + strand, within ECD_03302 at 3454.175 kb on - strand, within ECD_03302 at 3454.249 kb on + strand, within ECD_03302 at 3454.249 kb on + strand, within ECD_03302 at 3454.249 kb on + strand, within ECD_03302 at 3454.250 kb on - strand, within ECD_03302 at 3454.252 kb on + strand, within ECD_03302 at 3454.253 kb on - strand, within ECD_03302 at 3454.253 kb on - strand, within ECD_03302 at 3454.290 kb on + strand, within ECD_03302 at 3454.291 kb on - strand, within ECD_03302 at 3454.316 kb on - strand, within ECD_03302 at 3454.316 kb on - strand, within ECD_03302 at 3454.318 kb on + strand, within ECD_03302 at 3454.373 kb on + strand, within ECD_03302 at 3454.374 kb on - strand, within ECD_03302 at 3454.384 kb on + strand, within ECD_03302 at 3454.384 kb on + strand, within ECD_03302 at 3454.384 kb on + strand, within ECD_03302 at 3454.384 kb on + strand, within ECD_03302 at 3454.386 kb on + strand, within ECD_03302 at 3454.386 kb on + strand, within ECD_03302 at 3454.394 kb on + strand, within ECD_03302 at 3454.436 kb on - strand, within ECD_03302 at 3454.505 kb on - strand, within ECD_03302 at 3454.514 kb on + strand, within ECD_03302 at 3454.514 kb on + strand, within ECD_03302 at 3454.514 kb on + strand, within ECD_03302 at 3454.515 kb on - strand, within ECD_03302 at 3454.516 kb on + strand, within ECD_03302 at 3454.517 kb on - strand, within ECD_03302 at 3454.517 kb on - strand, within ECD_03302 at 3454.517 kb on - strand, within ECD_03302 at 3454.517 kb on - strand, within ECD_03302 at 3454.601 kb on + strand at 3454.679 kb on + strand at 3454.680 kb on - strand at 3454.680 kb on - strand at 3454.680 kb on - strand at 3454.681 kb on + strand at 3454.681 kb on + strand at 3454.742 kb on + strand at 3454.809 kb on + strand at 3454.809 kb on + strand at 3454.809 kb on + strand at 3454.812 kb on + strand at 3454.812 kb on + strand at 3454.812 kb on + strand at 3454.812 kb on + strand at 3454.812 kb on + strand at 3454.813 kb on - strand at 3454.813 kb on - strand at 3454.813 kb on - strand at 3454.912 kb on + strand at 3454.920 kb on - strand at 3454.988 kb on + strand at 3454.988 kb on + strand at 3455.092 kb on + strand at 3455.093 kb on - strand at 3455.095 kb on + strand at 3455.240 kb on + strand, within ECD_03303 at 3455.240 kb on + strand, within ECD_03303 at 3455.240 kb on + strand, within ECD_03303 at 3455.240 kb on + strand, within ECD_03303 at 3455.241 kb on - strand, within ECD_03303 at 3455.446 kb on + strand, within ECD_03303 at 3455.446 kb on + strand, within ECD_03303 at 3455.446 kb on + strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.457 kb on + strand, within ECD_03303 at 3455.609 kb on + strand, within ECD_03303 at 3455.655 kb on + strand, within ECD_03303 at 3455.656 kb on - strand, within ECD_03303 at 3455.660 kb on + strand, within ECD_03303
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,452,424 + -0.0 3,452,424 + -0.9 3,452,425 - -0.5 3,452,425 - -0.5 3,452,425 - +0.0 3,452,510 - ECD_03301 0.13 +0.4 3,452,523 + ECD_03301 0.14 -0.2 3,452,524 - ECD_03301 0.14 -0.9 3,452,530 + ECD_03301 0.15 -0.3 3,452,531 - ECD_03301 0.15 -0.4 3,452,531 - ECD_03301 0.15 -0.4 3,452,611 - ECD_03301 0.24 -1.9 3,452,611 - ECD_03301 0.24 -0.7 3,452,611 - ECD_03301 0.24 +0.8 3,452,611 - ECD_03301 0.24 -0.5 3,452,624 + ECD_03301 0.26 +0.2 3,452,671 + ECD_03301 0.31 -0.0 3,452,671 + ECD_03301 0.31 -1.2 3,452,752 - ECD_03301 0.40 -0.8 3,452,786 + ECD_03301 0.44 -0.1 3,452,941 - ECD_03301 0.61 +0.2 3,452,964 + ECD_03301 0.64 +0.6 3,452,965 - ECD_03301 0.64 -0.3 3,452,988 + ECD_03301 0.67 +0.2 3,452,988 + ECD_03301 0.67 +0.3 3,452,988 + ECD_03301 0.67 +0.3 3,452,988 + ECD_03301 0.67 +0.2 3,452,988 + ECD_03301 0.67 -0.8 3,452,989 - ECD_03301 0.67 -1.6 3,452,989 - ECD_03301 0.67 -0.6 3,452,989 - ECD_03301 0.67 +0.5 3,453,057 - ECD_03301 0.74 -0.2 3,453,081 + ECD_03301 0.77 -0.5 3,453,084 + ECD_03301 0.77 +0.2 3,453,084 + ECD_03301 0.77 -0.3 3,453,084 + ECD_03301 0.77 -0.1 3,453,084 + ECD_03301 0.77 +0.2 3,453,084 + ECD_03301 0.77 -0.3 3,453,084 + ECD_03301 0.77 +0.8 3,453,085 - ECD_03301 0.78 -0.4 3,453,196 + -0.7 3,453,206 - -0.7 3,453,241 - +0.7 3,453,284 + -0.3 3,453,353 - -0.5 3,453,374 - +0.0 3,453,564 - ECD_03302 0.14 +0.1 3,453,637 + ECD_03302 0.19 -0.3 3,453,637 + ECD_03302 0.19 +0.4 3,453,736 + ECD_03302 0.27 -0.3 3,453,737 - ECD_03302 0.27 +0.3 3,453,737 - ECD_03302 0.27 +0.2 3,453,737 - ECD_03302 0.27 +0.0 3,453,737 - ECD_03302 0.27 +0.3 3,453,747 - ECD_03302 0.28 -0.3 3,453,837 + ECD_03302 0.35 +0.3 3,453,838 - ECD_03302 0.35 +0.2 3,453,845 - ECD_03302 0.35 +0.8 3,453,845 - ECD_03302 0.35 -0.5 3,453,917 + ECD_03302 0.41 +0.0 3,453,920 - ECD_03302 0.41 -0.4 3,453,920 - ECD_03302 0.41 -0.1 3,453,920 - ECD_03302 0.41 +0.2 3,453,956 - ECD_03302 0.44 +0.2 3,453,956 - ECD_03302 0.44 +0.3 3,454,174 + ECD_03302 0.60 -0.3 3,454,175 - ECD_03302 0.60 +0.0 3,454,249 + ECD_03302 0.66 -0.9 3,454,249 + ECD_03302 0.66 -0.2 3,454,249 + ECD_03302 0.66 +0.3 3,454,250 - ECD_03302 0.66 +0.6 3,454,252 + ECD_03302 0.66 +0.9 3,454,253 - ECD_03302 0.66 -0.5 3,454,253 - ECD_03302 0.66 +0.0 3,454,290 + ECD_03302 0.69 -0.1 3,454,291 - ECD_03302 0.69 -0.3 3,454,316 - ECD_03302 0.71 +0.0 3,454,316 - ECD_03302 0.71 -0.0 3,454,318 + ECD_03302 0.71 +0.5 3,454,373 + ECD_03302 0.75 +0.4 3,454,374 - ECD_03302 0.75 -0.4 3,454,384 + ECD_03302 0.76 +0.6 3,454,384 + ECD_03302 0.76 -0.4 3,454,384 + ECD_03302 0.76 -0.1 3,454,384 + ECD_03302 0.76 +0.8 3,454,386 + ECD_03302 0.76 -0.5 3,454,386 + ECD_03302 0.76 -0.5 3,454,394 + ECD_03302 0.77 -0.5 3,454,436 - ECD_03302 0.80 +1.0 3,454,505 - ECD_03302 0.85 +0.2 3,454,514 + ECD_03302 0.86 +0.0 3,454,514 + ECD_03302 0.86 -0.1 3,454,514 + ECD_03302 0.86 +0.7 3,454,515 - ECD_03302 0.86 -0.3 3,454,516 + ECD_03302 0.86 -0.2 3,454,517 - ECD_03302 0.86 +0.7 3,454,517 - ECD_03302 0.86 -1.0 3,454,517 - ECD_03302 0.86 -0.1 3,454,517 - ECD_03302 0.86 +0.3 3,454,601 + +1.2 3,454,679 + -0.2 3,454,680 - -0.6 3,454,680 - -0.4 3,454,680 - +0.8 3,454,681 + -0.4 3,454,681 + -0.2 3,454,742 + +0.1 3,454,809 + -0.0 3,454,809 + -0.1 3,454,809 + -0.8 3,454,812 + +0.5 3,454,812 + +0.4 3,454,812 + -0.9 3,454,812 + -0.1 3,454,812 + -0.9 3,454,813 - -0.4 3,454,813 - +0.2 3,454,813 - +0.1 3,454,912 + -0.4 3,454,920 - +0.1 3,454,988 + -1.5 3,454,988 + +0.0 3,455,092 + +0.3 3,455,093 - -0.6 3,455,095 + -0.3 3,455,240 + ECD_03303 0.20 -1.2 3,455,240 + ECD_03303 0.20 -0.0 3,455,240 + ECD_03303 0.20 +0.7 3,455,240 + ECD_03303 0.20 +1.1 3,455,241 - ECD_03303 0.21 +0.1 3,455,446 + ECD_03303 0.49 -0.9 3,455,446 + ECD_03303 0.49 -0.2 3,455,446 + ECD_03303 0.49 -0.2 3,455,447 - ECD_03303 0.49 -1.1 3,455,447 - ECD_03303 0.49 +0.3 3,455,447 - ECD_03303 0.49 -0.3 3,455,447 - ECD_03303 0.49 +0.1 3,455,447 - ECD_03303 0.49 -0.2 3,455,447 - ECD_03303 0.49 -0.4 3,455,447 - ECD_03303 0.49 +0.2 3,455,457 + ECD_03303 0.51 +0.2 3,455,609 + ECD_03303 0.72 +0.5 3,455,655 + ECD_03303 0.79 -1.2 3,455,656 - ECD_03303 0.79 -0.1 3,455,660 + ECD_03303 0.79 -0.8
Or see this region's nucleotide sequence