Strain Fitness in Escherichia coli BL21 around ECD_03270

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03269 and ECD_03270 are separated by 611 nucleotidesECD_03270 and ECD_03271 are separated by 42 nucleotides ECD_03269: ECD_03269 - maltodextrin phosphorylase, at 3,410,376 to 3,412,769 _03269 ECD_03270: ECD_03270 - mal regulon transcriptional activator, at 3,413,381 to 3,416,086 _03270 ECD_03271: ECD_03271 - RNA 3'-terminal phosphate cyclase, at 3,416,129 to 3,417,145 _03271 Position (kb) 3413 3414 3415 3416 3417Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3412.487 kb on - strand, within ECD_03269at 3412.487 kb on - strand, within ECD_03269at 3412.507 kb on - strand, within ECD_03269at 3412.507 kb on - strand, within ECD_03269at 3412.579 kb on + strandat 3412.579 kb on + strandat 3412.579 kb on + strandat 3412.580 kb on - strandat 3412.580 kb on - strandat 3412.584 kb on - strandat 3412.584 kb on - strandat 3412.698 kb on + strandat 3412.757 kb on + strandat 3412.769 kb on + strandat 3412.770 kb on - strandat 3412.770 kb on - strandat 3412.770 kb on - strandat 3412.770 kb on - strandat 3412.770 kb on - strandat 3412.813 kb on - strandat 3412.858 kb on - strandat 3412.908 kb on + strandat 3412.908 kb on + strandat 3412.909 kb on - strandat 3412.952 kb on - strandat 3412.974 kb on - strandat 3412.974 kb on - strandat 3412.974 kb on - strandat 3413.116 kb on - strandat 3413.116 kb on - strandat 3413.156 kb on + strandat 3413.156 kb on + strandat 3413.188 kb on + strandat 3413.269 kb on - strandat 3413.314 kb on - strandat 3413.314 kb on - strandat 3413.315 kb on + strandat 3413.315 kb on + strandat 3413.327 kb on - strandat 3413.347 kb on + strandat 3413.347 kb on + strandat 3413.376 kb on + strandat 3413.376 kb on + strandat 3413.380 kb on + strandat 3413.381 kb on - strandat 3413.609 kb on + strandat 3413.610 kb on - strandat 3413.656 kb on - strand, within ECD_03270at 3413.656 kb on - strand, within ECD_03270at 3413.656 kb on - strand, within ECD_03270at 3413.684 kb on + strand, within ECD_03270at 3413.684 kb on + strand, within ECD_03270at 3413.685 kb on - strand, within ECD_03270at 3413.685 kb on - strand, within ECD_03270at 3413.741 kb on - strand, within ECD_03270at 3413.750 kb on + strand, within ECD_03270at 3413.769 kb on - strand, within ECD_03270at 3413.769 kb on - strand, within ECD_03270at 3413.783 kb on - strand, within ECD_03270at 3413.938 kb on + strand, within ECD_03270at 3413.938 kb on + strand, within ECD_03270at 3413.938 kb on + strand, within ECD_03270at 3414.046 kb on - strand, within ECD_03270at 3414.046 kb on - strand, within ECD_03270at 3414.046 kb on - strand, within ECD_03270at 3414.051 kb on + strand, within ECD_03270at 3414.052 kb on - strand, within ECD_03270at 3414.076 kb on + strand, within ECD_03270at 3414.140 kb on + strand, within ECD_03270at 3414.140 kb on + strand, within ECD_03270at 3414.338 kb on + strand, within ECD_03270at 3414.338 kb on + strand, within ECD_03270at 3414.355 kb on + strand, within ECD_03270at 3414.355 kb on + strand, within ECD_03270at 3414.515 kb on - strand, within ECD_03270at 3414.571 kb on + strand, within ECD_03270at 3414.664 kb on + strand, within ECD_03270at 3414.665 kb on - strand, within ECD_03270at 3414.734 kb on - strand, within ECD_03270at 3414.833 kb on + strand, within ECD_03270at 3414.833 kb on + strand, within ECD_03270at 3414.834 kb on - strand, within ECD_03270at 3414.836 kb on - strand, within ECD_03270at 3414.909 kb on + strand, within ECD_03270at 3414.956 kb on + strand, within ECD_03270at 3414.957 kb on - strand, within ECD_03270at 3414.972 kb on + strand, within ECD_03270at 3415.255 kb on - strand, within ECD_03270at 3415.255 kb on - strand, within ECD_03270at 3415.311 kb on - strand, within ECD_03270at 3415.311 kb on - strand, within ECD_03270at 3415.330 kb on + strand, within ECD_03270at 3415.355 kb on + strand, within ECD_03270at 3415.376 kb on - strand, within ECD_03270at 3415.567 kb on + strand, within ECD_03270at 3415.592 kb on + strand, within ECD_03270at 3415.592 kb on + strand, within ECD_03270at 3415.592 kb on + strand, within ECD_03270at 3415.592 kb on + strand, within ECD_03270at 3415.609 kb on + strand, within ECD_03270at 3415.610 kb on - strand, within ECD_03270at 3415.732 kb on + strand, within ECD_03270at 3415.735 kb on + strand, within ECD_03270at 3415.861 kb on - strandat 3415.908 kb on + strandat 3415.909 kb on - strandat 3415.922 kb on + strandat 3415.923 kb on - strandat 3415.932 kb on - strandat 3416.075 kb on + strandat 3416.075 kb on + strandat 3416.084 kb on + strandat 3416.085 kb on - strandat 3416.117 kb on + strandat 3416.117 kb on + strandat 3416.118 kb on - strandat 3416.118 kb on - strandat 3416.165 kb on + strandat 3416.246 kb on - strand, within ECD_03271at 3416.246 kb on - strand, within ECD_03271at 3416.298 kb on + strand, within ECD_03271at 3416.299 kb on - strand, within ECD_03271at 3416.299 kb on - strand, within ECD_03271at 3416.444 kb on - strand, within ECD_03271at 3416.555 kb on + strand, within ECD_03271at 3416.555 kb on + strand, within ECD_03271at 3416.555 kb on + strand, within ECD_03271at 3416.555 kb on + strand, within ECD_03271at 3416.556 kb on - strand, within ECD_03271at 3416.558 kb on + strand, within ECD_03271at 3416.559 kb on - strand, within ECD_03271at 3416.559 kb on - strand, within ECD_03271at 3416.559 kb on - strand, within ECD_03271at 3416.614 kb on + strand, within ECD_03271at 3416.615 kb on - strand, within ECD_03271at 3416.667 kb on + strand, within ECD_03271at 3416.851 kb on + strand, within ECD_03271at 3416.852 kb on - strand, within ECD_03271at 3416.852 kb on - strand, within ECD_03271at 3417.046 kb on + strandat 3417.046 kb on + strandat 3417.046 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,412,487 - ECD_03269 0.88 -0.1
3,412,487 - ECD_03269 0.88 +0.3
3,412,507 - ECD_03269 0.89 +0.4
3,412,507 - ECD_03269 0.89 +0.3
3,412,579 + +0.2
3,412,579 + +0.1
3,412,579 + -0.3
3,412,580 - +1.1
3,412,580 - +0.4
3,412,584 - +0.2
3,412,584 - -0.0
3,412,698 + -0.3
3,412,757 + -0.0
3,412,769 + -0.4
3,412,770 - +0.2
3,412,770 - +0.4
3,412,770 - +0.6
3,412,770 - +0.1
3,412,770 - -0.2
3,412,813 - -0.4
3,412,858 - +0.5
3,412,908 + +0.9
3,412,908 + -0.9
3,412,909 - -0.5
3,412,952 - -0.2
3,412,974 - -0.3
3,412,974 - +0.8
3,412,974 - +0.5
3,413,116 - -0.5
3,413,116 - -0.0
3,413,156 + -0.3
3,413,156 + +0.2
3,413,188 + -2.2
3,413,269 - +0.9
3,413,314 - +0.5
3,413,314 - -0.4
3,413,315 + -0.1
3,413,315 + -1.5
3,413,327 - +0.1
3,413,347 + +0.1
3,413,347 + -0.4
3,413,376 + -0.1
3,413,376 + +0.0
3,413,380 + +1.2
3,413,381 - -0.1
3,413,609 + +0.2
3,413,610 - -0.9
3,413,656 - ECD_03270 0.10 +1.4
3,413,656 - ECD_03270 0.10 +0.4
3,413,656 - ECD_03270 0.10 +0.1
3,413,684 + ECD_03270 0.11 +1.0
3,413,684 + ECD_03270 0.11 +0.2
3,413,685 - ECD_03270 0.11 +0.3
3,413,685 - ECD_03270 0.11 +0.8
3,413,741 - ECD_03270 0.13 +0.8
3,413,750 + ECD_03270 0.14 +0.8
3,413,769 - ECD_03270 0.14 +0.3
3,413,769 - ECD_03270 0.14 -0.4
3,413,783 - ECD_03270 0.15 +1.2
3,413,938 + ECD_03270 0.21 +0.5
3,413,938 + ECD_03270 0.21 +0.7
3,413,938 + ECD_03270 0.21 +0.2
3,414,046 - ECD_03270 0.25 +0.2
3,414,046 - ECD_03270 0.25 +0.0
3,414,046 - ECD_03270 0.25 -0.3
3,414,051 + ECD_03270 0.25 +0.9
3,414,052 - ECD_03270 0.25 -0.1
3,414,076 + ECD_03270 0.26 -0.2
3,414,140 + ECD_03270 0.28 +0.6
3,414,140 + ECD_03270 0.28 -0.5
3,414,338 + ECD_03270 0.35 +0.7
3,414,338 + ECD_03270 0.35 +0.3
3,414,355 + ECD_03270 0.36 +0.7
3,414,355 + ECD_03270 0.36 +0.6
3,414,515 - ECD_03270 0.42 -0.6
3,414,571 + ECD_03270 0.44 +0.7
3,414,664 + ECD_03270 0.47 +0.9
3,414,665 - ECD_03270 0.47 +0.5
3,414,734 - ECD_03270 0.50 -0.1
3,414,833 + ECD_03270 0.54 -0.8
3,414,833 + ECD_03270 0.54 +0.7
3,414,834 - ECD_03270 0.54 +0.9
3,414,836 - ECD_03270 0.54 +0.9
3,414,909 + ECD_03270 0.56 +0.4
3,414,956 + ECD_03270 0.58 +0.3
3,414,957 - ECD_03270 0.58 +4.0
3,414,972 + ECD_03270 0.59 -0.2
3,415,255 - ECD_03270 0.69 +1.7
3,415,255 - ECD_03270 0.69 +0.8
3,415,311 - ECD_03270 0.71 +1.7
3,415,311 - ECD_03270 0.71 +0.8
3,415,330 + ECD_03270 0.72 +0.8
3,415,355 + ECD_03270 0.73 +0.3
3,415,376 - ECD_03270 0.74 +0.5
3,415,567 + ECD_03270 0.81 +0.9
3,415,592 + ECD_03270 0.82 +0.6
3,415,592 + ECD_03270 0.82 +0.9
3,415,592 + ECD_03270 0.82 -0.1
3,415,592 + ECD_03270 0.82 +1.3
3,415,609 + ECD_03270 0.82 +0.3
3,415,610 - ECD_03270 0.82 +0.6
3,415,732 + ECD_03270 0.87 +0.4
3,415,735 + ECD_03270 0.87 +1.1
3,415,861 - +0.2
3,415,908 + +0.3
3,415,909 - +0.2
3,415,922 + +0.6
3,415,923 - -0.5
3,415,932 - +0.8
3,416,075 + +0.7
3,416,075 + +0.7
3,416,084 + -0.7
3,416,085 - +1.3
3,416,117 + -0.2
3,416,117 + +0.5
3,416,118 - +0.9
3,416,118 - +0.3
3,416,165 + -0.3
3,416,246 - ECD_03271 0.12 -0.1
3,416,246 - ECD_03271 0.12 +0.1
3,416,298 + ECD_03271 0.17 +0.0
3,416,299 - ECD_03271 0.17 -0.7
3,416,299 - ECD_03271 0.17 -0.4
3,416,444 - ECD_03271 0.31 +0.4
3,416,555 + ECD_03271 0.42 +0.0
3,416,555 + ECD_03271 0.42 +0.7
3,416,555 + ECD_03271 0.42 -0.4
3,416,555 + ECD_03271 0.42 +0.5
3,416,556 - ECD_03271 0.42 +1.2
3,416,558 + ECD_03271 0.42 -0.3
3,416,559 - ECD_03271 0.42 -0.5
3,416,559 - ECD_03271 0.42 -0.2
3,416,559 - ECD_03271 0.42 +0.8
3,416,614 + ECD_03271 0.48 +0.1
3,416,615 - ECD_03271 0.48 +0.1
3,416,667 + ECD_03271 0.53 -0.1
3,416,851 + ECD_03271 0.71 +0.3
3,416,852 - ECD_03271 0.71 -1.2
3,416,852 - ECD_03271 0.71 +0.3
3,417,046 + +0.4
3,417,046 + -0.1
3,417,046 + +0.3

Or see this region's nucleotide sequence