Strain Fitness in Escherichia coli BL21 around ECD_03220

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03219 and ECD_03220 are separated by 246 nucleotidesECD_03220 and ECD_03221 are separated by 294 nucleotides ECD_03219: ECD_03219 - fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase, at 3,357,429 to 3,358,802 _03219 ECD_03220: ECD_03220 - small lipoprotein, at 3,359,049 to 3,359,216 _03220 ECD_03221: ECD_03221 - putative fructoselysine transporter, at 3,359,511 to 3,360,848 _03221 Position (kb) 3359 3360Strain fitness (log2 ratio) -1 0 1at 3358.419 kb on - strand, within ECD_03219at 3358.569 kb on + strand, within ECD_03219at 3358.569 kb on + strand, within ECD_03219at 3358.570 kb on - strand, within ECD_03219at 3358.746 kb on - strandat 3358.801 kb on - strandat 3359.108 kb on + strand, within ECD_03220at 3359.108 kb on + strand, within ECD_03220at 3359.282 kb on + strandat 3359.293 kb on - strandat 3359.332 kb on + strandat 3359.350 kb on + strandat 3359.479 kb on + strandat 3359.487 kb on - strandat 3359.487 kb on - strandat 3359.505 kb on - strandat 3359.599 kb on + strandat 3359.600 kb on - strandat 3359.642 kb on + strandat 3359.698 kb on - strand, within ECD_03221at 3359.707 kb on + strand, within ECD_03221at 3359.708 kb on - strand, within ECD_03221at 3359.708 kb on - strand, within ECD_03221at 3359.740 kb on - strand, within ECD_03221at 3359.924 kb on + strand, within ECD_03221at 3359.925 kb on - strand, within ECD_03221at 3359.925 kb on - strand, within ECD_03221at 3359.932 kb on + strand, within ECD_03221at 3359.933 kb on - strand, within ECD_03221at 3359.933 kb on - strand, within ECD_03221at 3359.974 kb on + strand, within ECD_03221at 3359.979 kb on - strand, within ECD_03221at 3359.979 kb on - strand, within ECD_03221at 3359.979 kb on - strand, within ECD_03221at 3360.035 kb on + strand, within ECD_03221at 3360.093 kb on - strand, within ECD_03221at 3360.132 kb on + strand, within ECD_03221at 3360.149 kb on + strand, within ECD_03221at 3360.149 kb on + strand, within ECD_03221at 3360.149 kb on + strand, within ECD_03221at 3360.150 kb on - strand, within ECD_03221at 3360.150 kb on - strand, within ECD_03221at 3360.157 kb on - strand, within ECD_03221at 3360.158 kb on + strand, within ECD_03221at 3360.173 kb on + strand, within ECD_03221

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,358,419 - ECD_03219 0.72 -0.8
3,358,569 + ECD_03219 0.83 +0.5
3,358,569 + ECD_03219 0.83 -1.3
3,358,570 - ECD_03219 0.83 +1.4
3,358,746 - -0.8
3,358,801 - -0.2
3,359,108 + ECD_03220 0.35 -0.1
3,359,108 + ECD_03220 0.35 +0.9
3,359,282 + +0.7
3,359,293 - +0.1
3,359,332 + +0.6
3,359,350 + -0.7
3,359,479 + +0.4
3,359,487 - +0.2
3,359,487 - +0.9
3,359,505 - -1.0
3,359,599 + +0.2
3,359,600 - -0.1
3,359,642 + +0.9
3,359,698 - ECD_03221 0.14 -0.5
3,359,707 + ECD_03221 0.15 +0.1
3,359,708 - ECD_03221 0.15 +0.8
3,359,708 - ECD_03221 0.15 +0.4
3,359,740 - ECD_03221 0.17 +0.7
3,359,924 + ECD_03221 0.31 -0.1
3,359,925 - ECD_03221 0.31 -0.2
3,359,925 - ECD_03221 0.31 +0.0
3,359,932 + ECD_03221 0.31 +1.4
3,359,933 - ECD_03221 0.32 -0.3
3,359,933 - ECD_03221 0.32 -0.2
3,359,974 + ECD_03221 0.35 +0.1
3,359,979 - ECD_03221 0.35 -0.4
3,359,979 - ECD_03221 0.35 +0.3
3,359,979 - ECD_03221 0.35 +0.3
3,360,035 + ECD_03221 0.39 -0.6
3,360,093 - ECD_03221 0.43 +0.1
3,360,132 + ECD_03221 0.46 +0.7
3,360,149 + ECD_03221 0.48 -0.1
3,360,149 + ECD_03221 0.48 +0.1
3,360,149 + ECD_03221 0.48 +0.2
3,360,150 - ECD_03221 0.48 -0.2
3,360,150 - ECD_03221 0.48 -0.6
3,360,157 - ECD_03221 0.48 +0.5
3,360,158 + ECD_03221 0.48 -0.9
3,360,173 + ECD_03221 0.49 -0.9

Or see this region's nucleotide sequence