Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03210 and ECD_03211 are separated by 85 nucleotides ECD_03211 and ECD_03212 are separated by 31 nucleotides ECD_03212 and ECD_03213 overlap by 11 nucleotides ECD_03213 and ECD_03214 are separated by 104 nucleotides
ECD_03210: ECD_03210 - bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase, at 3,348,561 to 3,349,781
_03210
ECD_03211: ECD_03211 - aminodeoxychorismate synthase, subunit II, at 3,349,867 to 3,350,430
_03211
ECD_03212: ECD_03212 - stationary phase-induced protein, putative toxin, at 3,350,462 to 3,351,064
_03212
ECD_03213: ECD_03213 - putative antitoxin for Fic, at 3,351,054 to 3,351,221
_03213
ECD_03214: ECD_03214 - peptidyl-prolyl cis-trans isomerase A (rotamase A), at 3,351,326 to 3,351,898
_03214
Position (kb)
3350
3351
3352 Strain fitness (log2 ratio)
-2
-1
0
1 at 3349.470 kb on - strand, within ECD_03210 at 3349.554 kb on - strand, within ECD_03210 at 3349.651 kb on + strand, within ECD_03210 at 3349.652 kb on - strand, within ECD_03210 at 3349.652 kb on - strand, within ECD_03210 at 3349.703 kb on + strand at 3349.704 kb on - strand at 3349.721 kb on - strand at 3349.721 kb on - strand at 3349.798 kb on + strand at 3349.798 kb on + strand at 3349.799 kb on - strand at 3349.799 kb on - strand at 3349.799 kb on - strand at 3349.799 kb on - strand at 3349.821 kb on - strand at 3349.834 kb on - strand at 3349.917 kb on + strand at 3350.021 kb on - strand, within ECD_03211 at 3350.052 kb on - strand, within ECD_03211 at 3350.064 kb on + strand, within ECD_03211 at 3350.103 kb on + strand, within ECD_03211 at 3350.103 kb on + strand, within ECD_03211 at 3350.268 kb on + strand, within ECD_03211 at 3350.269 kb on - strand, within ECD_03211 at 3350.269 kb on - strand, within ECD_03211 at 3350.409 kb on - strand at 3350.409 kb on - strand at 3350.409 kb on - strand at 3350.409 kb on - strand at 3350.412 kb on + strand at 3350.413 kb on - strand at 3350.413 kb on - strand at 3350.413 kb on - strand at 3350.416 kb on + strand at 3350.416 kb on + strand at 3350.416 kb on + strand at 3350.417 kb on - strand at 3350.417 kb on - strand at 3350.417 kb on - strand at 3350.418 kb on + strand at 3350.418 kb on + strand at 3350.419 kb on - strand at 3350.459 kb on - strand at 3350.463 kb on + strand at 3350.498 kb on - strand at 3350.498 kb on - strand at 3350.501 kb on + strand at 3350.502 kb on - strand at 3350.683 kb on - strand, within ECD_03212 at 3350.685 kb on + strand, within ECD_03212 at 3350.866 kb on - strand, within ECD_03212 at 3350.881 kb on + strand, within ECD_03212 at 3351.010 kb on + strand at 3351.010 kb on + strand at 3351.024 kb on + strand at 3351.025 kb on - strand at 3351.030 kb on + strand at 3351.030 kb on + strand at 3351.056 kb on - strand at 3351.064 kb on + strand at 3351.065 kb on - strand at 3351.111 kb on - strand, within ECD_03213 at 3351.111 kb on - strand, within ECD_03213 at 3351.165 kb on - strand, within ECD_03213 at 3351.257 kb on + strand at 3351.257 kb on + strand at 3351.257 kb on + strand at 3351.258 kb on - strand at 3351.258 kb on - strand at 3351.258 kb on - strand at 3351.258 kb on - strand at 3351.260 kb on - strand at 3351.327 kb on + strand at 3351.381 kb on + strand at 3351.667 kb on + strand, within ECD_03214 at 3351.695 kb on - strand, within ECD_03214 at 3351.703 kb on + strand, within ECD_03214 at 3351.704 kb on - strand, within ECD_03214 at 3351.706 kb on - strand, within ECD_03214 at 3351.723 kb on + strand, within ECD_03214 at 3351.724 kb on - strand, within ECD_03214 at 3351.724 kb on - strand, within ECD_03214 at 3351.806 kb on + strand, within ECD_03214 at 3351.806 kb on + strand, within ECD_03214 at 3352.001 kb on + strand at 3352.003 kb on + strand at 3352.003 kb on + strand at 3352.003 kb on + strand at 3352.007 kb on + strand at 3352.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,349,470 - ECD_03210 0.74 +0.1 3,349,554 - ECD_03210 0.81 +0.1 3,349,651 + ECD_03210 0.89 +0.4 3,349,652 - ECD_03210 0.89 -1.9 3,349,652 - ECD_03210 0.89 +0.5 3,349,703 + -0.1 3,349,704 - +0.6 3,349,721 - +0.3 3,349,721 - +0.3 3,349,798 + -0.4 3,349,798 + +0.8 3,349,799 - -0.6 3,349,799 - +0.2 3,349,799 - -0.4 3,349,799 - +0.6 3,349,821 - +0.6 3,349,834 - +0.1 3,349,917 + +0.1 3,350,021 - ECD_03211 0.27 -0.0 3,350,052 - ECD_03211 0.33 -0.7 3,350,064 + ECD_03211 0.35 -0.3 3,350,103 + ECD_03211 0.42 -0.5 3,350,103 + ECD_03211 0.42 -0.8 3,350,268 + ECD_03211 0.71 -0.9 3,350,269 - ECD_03211 0.71 +0.0 3,350,269 - ECD_03211 0.71 +0.3 3,350,409 - +0.1 3,350,409 - -0.2 3,350,409 - +0.1 3,350,409 - -0.5 3,350,412 + +0.1 3,350,413 - +0.0 3,350,413 - +0.5 3,350,413 - -0.3 3,350,416 + -0.2 3,350,416 + -0.1 3,350,416 + -0.4 3,350,417 - +0.3 3,350,417 - -0.0 3,350,417 - +0.1 3,350,418 + +0.6 3,350,418 + -0.1 3,350,419 - +0.6 3,350,459 - +0.9 3,350,463 + +0.3 3,350,498 - -0.1 3,350,498 - +0.3 3,350,501 + +0.5 3,350,502 - +0.0 3,350,683 - ECD_03212 0.37 +1.4 3,350,685 + ECD_03212 0.37 +1.1 3,350,866 - ECD_03212 0.67 -0.1 3,350,881 + ECD_03212 0.69 +0.1 3,351,010 + -0.1 3,351,010 + -0.8 3,351,024 + +1.0 3,351,025 - -2.3 3,351,030 + +0.4 3,351,030 + -0.2 3,351,056 - +0.6 3,351,064 + +0.6 3,351,065 - -0.9 3,351,111 - ECD_03213 0.34 +0.2 3,351,111 - ECD_03213 0.34 +0.1 3,351,165 - ECD_03213 0.66 +0.3 3,351,257 + +0.0 3,351,257 + +0.5 3,351,257 + -0.5 3,351,258 - -0.8 3,351,258 - -0.2 3,351,258 - +1.3 3,351,258 - -0.4 3,351,260 - -0.4 3,351,327 + -0.0 3,351,381 + -0.3 3,351,667 + ECD_03214 0.60 -1.0 3,351,695 - ECD_03214 0.64 +0.4 3,351,703 + ECD_03214 0.66 +0.4 3,351,704 - ECD_03214 0.66 -1.0 3,351,706 - ECD_03214 0.66 +0.2 3,351,723 + ECD_03214 0.69 -0.1 3,351,724 - ECD_03214 0.69 +0.0 3,351,724 - ECD_03214 0.69 +0.4 3,351,806 + ECD_03214 0.84 -1.0 3,351,806 + ECD_03214 0.84 -0.5 3,352,001 + +0.0 3,352,003 + -0.9 3,352,003 + -0.0 3,352,003 + +0.3 3,352,007 + -0.7 3,352,051 - -0.4
Or see this region's nucleotide sequence