Strain Fitness in Escherichia coli BL21 around ECD_03212

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03210 and ECD_03211 are separated by 85 nucleotidesECD_03211 and ECD_03212 are separated by 31 nucleotidesECD_03212 and ECD_03213 overlap by 11 nucleotidesECD_03213 and ECD_03214 are separated by 104 nucleotides ECD_03210: ECD_03210 - bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase, at 3,348,561 to 3,349,781 _03210 ECD_03211: ECD_03211 - aminodeoxychorismate synthase, subunit II, at 3,349,867 to 3,350,430 _03211 ECD_03212: ECD_03212 - stationary phase-induced protein, putative toxin, at 3,350,462 to 3,351,064 _03212 ECD_03213: ECD_03213 - putative antitoxin for Fic, at 3,351,054 to 3,351,221 _03213 ECD_03214: ECD_03214 - peptidyl-prolyl cis-trans isomerase A (rotamase A), at 3,351,326 to 3,351,898 _03214 Position (kb) 3350 3351 3352Strain fitness (log2 ratio) -2 -1 0 1at 3349.470 kb on - strand, within ECD_03210at 3349.554 kb on - strand, within ECD_03210at 3349.651 kb on + strand, within ECD_03210at 3349.652 kb on - strand, within ECD_03210at 3349.652 kb on - strand, within ECD_03210at 3349.703 kb on + strandat 3349.704 kb on - strandat 3349.721 kb on - strandat 3349.721 kb on - strandat 3349.798 kb on + strandat 3349.798 kb on + strandat 3349.799 kb on - strandat 3349.799 kb on - strandat 3349.799 kb on - strandat 3349.799 kb on - strandat 3349.821 kb on - strandat 3349.834 kb on - strandat 3349.917 kb on + strandat 3350.021 kb on - strand, within ECD_03211at 3350.052 kb on - strand, within ECD_03211at 3350.064 kb on + strand, within ECD_03211at 3350.103 kb on + strand, within ECD_03211at 3350.103 kb on + strand, within ECD_03211at 3350.268 kb on + strand, within ECD_03211at 3350.269 kb on - strand, within ECD_03211at 3350.269 kb on - strand, within ECD_03211at 3350.409 kb on - strandat 3350.409 kb on - strandat 3350.409 kb on - strandat 3350.409 kb on - strandat 3350.412 kb on + strandat 3350.413 kb on - strandat 3350.413 kb on - strandat 3350.413 kb on - strandat 3350.416 kb on + strandat 3350.416 kb on + strandat 3350.416 kb on + strandat 3350.417 kb on - strandat 3350.417 kb on - strandat 3350.417 kb on - strandat 3350.418 kb on + strandat 3350.418 kb on + strandat 3350.419 kb on - strandat 3350.459 kb on - strandat 3350.463 kb on + strandat 3350.498 kb on - strandat 3350.498 kb on - strandat 3350.501 kb on + strandat 3350.502 kb on - strandat 3350.683 kb on - strand, within ECD_03212at 3350.685 kb on + strand, within ECD_03212at 3350.866 kb on - strand, within ECD_03212at 3350.881 kb on + strand, within ECD_03212at 3351.010 kb on + strandat 3351.010 kb on + strandat 3351.024 kb on + strandat 3351.025 kb on - strandat 3351.030 kb on + strandat 3351.030 kb on + strandat 3351.056 kb on - strandat 3351.064 kb on + strandat 3351.065 kb on - strandat 3351.111 kb on - strand, within ECD_03213at 3351.111 kb on - strand, within ECD_03213at 3351.165 kb on - strand, within ECD_03213at 3351.257 kb on + strandat 3351.257 kb on + strandat 3351.257 kb on + strandat 3351.258 kb on - strandat 3351.258 kb on - strandat 3351.258 kb on - strandat 3351.258 kb on - strandat 3351.260 kb on - strandat 3351.327 kb on + strandat 3351.381 kb on + strandat 3351.667 kb on + strand, within ECD_03214at 3351.695 kb on - strand, within ECD_03214at 3351.703 kb on + strand, within ECD_03214at 3351.704 kb on - strand, within ECD_03214at 3351.706 kb on - strand, within ECD_03214at 3351.723 kb on + strand, within ECD_03214at 3351.724 kb on - strand, within ECD_03214at 3351.724 kb on - strand, within ECD_03214at 3351.806 kb on + strand, within ECD_03214at 3351.806 kb on + strand, within ECD_03214at 3352.001 kb on + strandat 3352.003 kb on + strandat 3352.003 kb on + strandat 3352.003 kb on + strandat 3352.007 kb on + strandat 3352.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,349,470 - ECD_03210 0.74 +0.1
3,349,554 - ECD_03210 0.81 +0.1
3,349,651 + ECD_03210 0.89 +0.4
3,349,652 - ECD_03210 0.89 -1.9
3,349,652 - ECD_03210 0.89 +0.5
3,349,703 + -0.1
3,349,704 - +0.6
3,349,721 - +0.3
3,349,721 - +0.3
3,349,798 + -0.4
3,349,798 + +0.8
3,349,799 - -0.6
3,349,799 - +0.2
3,349,799 - -0.4
3,349,799 - +0.6
3,349,821 - +0.6
3,349,834 - +0.1
3,349,917 + +0.1
3,350,021 - ECD_03211 0.27 -0.0
3,350,052 - ECD_03211 0.33 -0.7
3,350,064 + ECD_03211 0.35 -0.3
3,350,103 + ECD_03211 0.42 -0.5
3,350,103 + ECD_03211 0.42 -0.8
3,350,268 + ECD_03211 0.71 -0.9
3,350,269 - ECD_03211 0.71 +0.0
3,350,269 - ECD_03211 0.71 +0.3
3,350,409 - +0.1
3,350,409 - -0.2
3,350,409 - +0.1
3,350,409 - -0.5
3,350,412 + +0.1
3,350,413 - +0.0
3,350,413 - +0.5
3,350,413 - -0.3
3,350,416 + -0.2
3,350,416 + -0.1
3,350,416 + -0.4
3,350,417 - +0.3
3,350,417 - -0.0
3,350,417 - +0.1
3,350,418 + +0.6
3,350,418 + -0.1
3,350,419 - +0.6
3,350,459 - +0.9
3,350,463 + +0.3
3,350,498 - -0.1
3,350,498 - +0.3
3,350,501 + +0.5
3,350,502 - +0.0
3,350,683 - ECD_03212 0.37 +1.4
3,350,685 + ECD_03212 0.37 +1.1
3,350,866 - ECD_03212 0.67 -0.1
3,350,881 + ECD_03212 0.69 +0.1
3,351,010 + -0.1
3,351,010 + -0.8
3,351,024 + +1.0
3,351,025 - -2.3
3,351,030 + +0.4
3,351,030 + -0.2
3,351,056 - +0.6
3,351,064 + +0.6
3,351,065 - -0.9
3,351,111 - ECD_03213 0.34 +0.2
3,351,111 - ECD_03213 0.34 +0.1
3,351,165 - ECD_03213 0.66 +0.3
3,351,257 + +0.0
3,351,257 + +0.5
3,351,257 + -0.5
3,351,258 - -0.8
3,351,258 - -0.2
3,351,258 - +1.3
3,351,258 - -0.4
3,351,260 - -0.4
3,351,327 + -0.0
3,351,381 + -0.3
3,351,667 + ECD_03214 0.60 -1.0
3,351,695 - ECD_03214 0.64 +0.4
3,351,703 + ECD_03214 0.66 +0.4
3,351,704 - ECD_03214 0.66 -1.0
3,351,706 - ECD_03214 0.66 +0.2
3,351,723 + ECD_03214 0.69 -0.1
3,351,724 - ECD_03214 0.69 +0.0
3,351,724 - ECD_03214 0.69 +0.4
3,351,806 + ECD_03214 0.84 -1.0
3,351,806 + ECD_03214 0.84 -0.5
3,352,001 + +0.0
3,352,003 + -0.9
3,352,003 + -0.0
3,352,003 + +0.3
3,352,007 + -0.7
3,352,051 - -0.4

Or see this region's nucleotide sequence