Strain Fitness in Escherichia coli BL21 around ECD_03187

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03185 and ECD_03186 overlap by 1 nucleotidesECD_03186 and ECD_03187 are separated by 28 nucleotidesECD_03187 and ECD_03188 are separated by 71 nucleotidesECD_03188 and ECD_03189 are separated by 168 nucleotides ECD_03185: ECD_03185 - general secretory pathway component, cryptic, at 3,325,316 to 3,325,777 _03185 ECD_03186: ECD_03186 - bifunctional prepilin leader peptidase/ methylase, at 3,325,777 to 3,326,454 _03186 ECD_03187: ECD_03187 - bacterioferritin, iron storage and detoxification protein, at 3,326,483 to 3,326,959 _03187 ECD_03188: ECD_03188 - bacterioferritin-associated ferredoxin, at 3,327,031 to 3,327,225 _03188 ECD_03189: ECD_03189 - periplasmic endochitinase, at 3,327,394 to 3,329,454 _03189 Position (kb) 3326 3327Strain fitness (log2 ratio) -1 0 1 2at 3325.552 kb on + strand, within ECD_03185at 3325.553 kb on - strand, within ECD_03185at 3325.616 kb on - strand, within ECD_03185at 3325.688 kb on + strand, within ECD_03185at 3325.689 kb on - strand, within ECD_03185at 3325.689 kb on - strand, within ECD_03185at 3325.689 kb on - strand, within ECD_03185at 3325.689 kb on - strand, within ECD_03185at 3325.776 kb on - strandat 3325.935 kb on + strand, within ECD_03186at 3325.935 kb on + strand, within ECD_03186at 3325.935 kb on + strand, within ECD_03186at 3325.936 kb on - strand, within ECD_03186at 3325.936 kb on - strand, within ECD_03186at 3325.936 kb on - strand, within ECD_03186at 3325.936 kb on - strand, within ECD_03186at 3326.024 kb on - strand, within ECD_03186at 3326.117 kb on + strand, within ECD_03186at 3326.118 kb on - strand, within ECD_03186at 3326.118 kb on - strand, within ECD_03186at 3326.121 kb on + strand, within ECD_03186at 3326.121 kb on + strand, within ECD_03186at 3326.161 kb on + strand, within ECD_03186at 3326.200 kb on + strand, within ECD_03186at 3326.217 kb on - strand, within ECD_03186at 3326.258 kb on + strand, within ECD_03186at 3326.258 kb on + strand, within ECD_03186at 3326.306 kb on + strand, within ECD_03186at 3326.375 kb on + strand, within ECD_03186at 3326.375 kb on + strand, within ECD_03186at 3326.376 kb on - strand, within ECD_03186at 3326.376 kb on - strand, within ECD_03186at 3326.420 kb on + strandat 3326.421 kb on - strandat 3326.431 kb on + strandat 3326.450 kb on - strandat 3326.450 kb on - strandat 3326.597 kb on + strand, within ECD_03187at 3326.598 kb on - strand, within ECD_03187at 3326.748 kb on - strand, within ECD_03187at 3326.785 kb on + strand, within ECD_03187at 3326.785 kb on + strand, within ECD_03187at 3326.785 kb on + strand, within ECD_03187at 3326.786 kb on - strand, within ECD_03187at 3326.827 kb on - strand, within ECD_03187at 3326.827 kb on - strand, within ECD_03187at 3326.944 kb on + strandat 3326.994 kb on - strandat 3326.994 kb on - strandat 3327.010 kb on - strandat 3327.010 kb on - strandat 3327.065 kb on - strand, within ECD_03188at 3327.207 kb on + strandat 3327.208 kb on - strandat 3327.208 kb on - strandat 3327.221 kb on + strandat 3327.222 kb on - strandat 3327.222 kb on - strandat 3327.222 kb on - strandat 3327.222 kb on - strandat 3327.225 kb on + strandat 3327.226 kb on - strandat 3327.226 kb on - strandat 3327.395 kb on + strandat 3327.396 kb on - strandat 3327.403 kb on - strandat 3327.520 kb on - strandat 3327.520 kb on - strandat 3327.537 kb on + strandat 3327.537 kb on + strandat 3327.537 kb on + strandat 3327.538 kb on - strandat 3327.581 kb on + strandat 3327.581 kb on + strandat 3327.581 kb on + strandat 3327.582 kb on - strandat 3327.582 kb on - strandat 3327.582 kb on - strandat 3327.636 kb on + strand, within ECD_03189at 3327.636 kb on + strand, within ECD_03189at 3327.637 kb on - strand, within ECD_03189at 3327.661 kb on - strand, within ECD_03189at 3327.721 kb on - strand, within ECD_03189at 3327.744 kb on + strand, within ECD_03189at 3327.773 kb on + strand, within ECD_03189at 3327.773 kb on + strand, within ECD_03189at 3327.774 kb on - strand, within ECD_03189at 3327.774 kb on - strand, within ECD_03189at 3327.891 kb on + strand, within ECD_03189at 3327.897 kb on + strand, within ECD_03189at 3327.898 kb on - strand, within ECD_03189at 3327.921 kb on + strand, within ECD_03189at 3327.922 kb on - strand, within ECD_03189at 3327.922 kb on - strand, within ECD_03189at 3327.922 kb on - strand, within ECD_03189

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
3,325,552 + ECD_03185 0.51 +0.2
3,325,553 - ECD_03185 0.51 +0.5
3,325,616 - ECD_03185 0.65 -0.2
3,325,688 + ECD_03185 0.81 +0.0
3,325,689 - ECD_03185 0.81 +0.2
3,325,689 - ECD_03185 0.81 -0.4
3,325,689 - ECD_03185 0.81 +0.7
3,325,689 - ECD_03185 0.81 +0.2
3,325,776 - -0.0
3,325,935 + ECD_03186 0.23 +1.2
3,325,935 + ECD_03186 0.23 +0.6
3,325,935 + ECD_03186 0.23 +0.6
3,325,936 - ECD_03186 0.23 +0.5
3,325,936 - ECD_03186 0.23 +0.3
3,325,936 - ECD_03186 0.23 -0.2
3,325,936 - ECD_03186 0.23 +0.2
3,326,024 - ECD_03186 0.36 -0.2
3,326,117 + ECD_03186 0.50 -0.5
3,326,118 - ECD_03186 0.50 -0.1
3,326,118 - ECD_03186 0.50 -0.7
3,326,121 + ECD_03186 0.51 +0.2
3,326,121 + ECD_03186 0.51 -0.1
3,326,161 + ECD_03186 0.57 -0.1
3,326,200 + ECD_03186 0.62 -0.5
3,326,217 - ECD_03186 0.65 -0.0
3,326,258 + ECD_03186 0.71 +0.5
3,326,258 + ECD_03186 0.71 +0.2
3,326,306 + ECD_03186 0.78 -0.5
3,326,375 + ECD_03186 0.88 -0.0
3,326,375 + ECD_03186 0.88 +1.0
3,326,376 - ECD_03186 0.88 -0.6
3,326,376 - ECD_03186 0.88 +0.5
3,326,420 + -0.2
3,326,421 - +0.9
3,326,431 + -0.3
3,326,450 - -0.3
3,326,450 - +0.3
3,326,597 + ECD_03187 0.24 +1.1
3,326,598 - ECD_03187 0.24 +0.2
3,326,748 - ECD_03187 0.56 +0.3
3,326,785 + ECD_03187 0.63 +0.0
3,326,785 + ECD_03187 0.63 +0.1
3,326,785 + ECD_03187 0.63 +0.9
3,326,786 - ECD_03187 0.64 +1.5
3,326,827 - ECD_03187 0.72 -0.2
3,326,827 - ECD_03187 0.72 +0.6
3,326,944 + +0.1
3,326,994 - -0.2
3,326,994 - +0.1
3,327,010 - -0.2
3,327,010 - +1.0
3,327,065 - ECD_03188 0.17 +0.2
3,327,207 + -0.6
3,327,208 - +0.0
3,327,208 - +0.7
3,327,221 + +0.5
3,327,222 - +0.1
3,327,222 - +0.0
3,327,222 - +0.5
3,327,222 - -0.3
3,327,225 + -0.1
3,327,226 - -1.1
3,327,226 - +0.2
3,327,395 + -0.1
3,327,396 - -0.1
3,327,403 - +0.3
3,327,520 - +0.0
3,327,520 - +0.6
3,327,537 + +0.4
3,327,537 + +0.6
3,327,537 + -0.5
3,327,538 - +0.0
3,327,581 + +0.0
3,327,581 + +2.0
3,327,581 + +0.3
3,327,582 - +0.5
3,327,582 - -0.6
3,327,582 - +0.1
3,327,636 + ECD_03189 0.12 +1.2
3,327,636 + ECD_03189 0.12 -0.8
3,327,637 - ECD_03189 0.12 +1.8
3,327,661 - ECD_03189 0.13 +0.8
3,327,721 - ECD_03189 0.16 +0.4
3,327,744 + ECD_03189 0.17 -0.5
3,327,773 + ECD_03189 0.18 +0.4
3,327,773 + ECD_03189 0.18 +1.0
3,327,774 - ECD_03189 0.18 +0.2
3,327,774 - ECD_03189 0.18 +0.8
3,327,891 + ECD_03189 0.24 -0.7
3,327,897 + ECD_03189 0.24 +0.1
3,327,898 - ECD_03189 0.24 -0.2
3,327,921 + ECD_03189 0.26 +0.1
3,327,922 - ECD_03189 0.26 +0.1
3,327,922 - ECD_03189 0.26 +0.6
3,327,922 - ECD_03189 0.26 -0.4

Or see this region's nucleotide sequence