Strain Fitness in Escherichia coli BL21 around ECD_03184

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03182 and ECD_03183 overlap by 8 nucleotidesECD_03183 and ECD_03184 are separated by 14 nucleotidesECD_03184 and ECD_03185 overlap by 4 nucleotidesECD_03185 and ECD_03186 overlap by 1 nucleotides ECD_03182: ECD_03182 - putative general secretory pathway component, cryptic, at 3,322,578 to 3,323,165 _03182 ECD_03183: ECD_03183 - general secretory pathway component, cryptic, at 3,323,158 to 3,324,141 _03183 ECD_03184: ECD_03184 - general secretory pathway component, cryptic, at 3,324,156 to 3,325,319 _03184 ECD_03185: ECD_03185 - general secretory pathway component, cryptic, at 3,325,316 to 3,325,777 _03185 ECD_03186: ECD_03186 - bifunctional prepilin leader peptidase/ methylase, at 3,325,777 to 3,326,454 _03186 Position (kb) 3324 3325 3326Strain fitness (log2 ratio) -1 0 1at 3323.163 kb on + strandat 3323.195 kb on + strandat 3323.195 kb on + strandat 3323.196 kb on - strandat 3323.196 kb on - strandat 3323.196 kb on - strandat 3323.204 kb on + strandat 3323.205 kb on - strandat 3323.280 kb on - strand, within ECD_03183at 3323.302 kb on + strand, within ECD_03183at 3323.308 kb on - strand, within ECD_03183at 3323.355 kb on + strand, within ECD_03183at 3323.535 kb on - strand, within ECD_03183at 3323.535 kb on - strand, within ECD_03183at 3323.608 kb on + strand, within ECD_03183at 3323.608 kb on + strand, within ECD_03183at 3323.610 kb on + strand, within ECD_03183at 3323.610 kb on + strand, within ECD_03183at 3323.652 kb on + strand, within ECD_03183at 3323.721 kb on - strand, within ECD_03183at 3323.721 kb on - strand, within ECD_03183at 3323.721 kb on - strand, within ECD_03183at 3323.729 kb on + strand, within ECD_03183at 3323.738 kb on + strand, within ECD_03183at 3323.753 kb on - strand, within ECD_03183at 3323.771 kb on - strand, within ECD_03183at 3323.799 kb on + strand, within ECD_03183at 3323.800 kb on - strand, within ECD_03183at 3323.811 kb on + strand, within ECD_03183at 3323.812 kb on - strand, within ECD_03183at 3323.812 kb on - strand, within ECD_03183at 3323.814 kb on + strand, within ECD_03183at 3323.815 kb on - strand, within ECD_03183at 3323.832 kb on + strand, within ECD_03183at 3323.853 kb on - strand, within ECD_03183at 3323.921 kb on + strand, within ECD_03183at 3324.012 kb on + strand, within ECD_03183at 3324.042 kb on + strand, within ECD_03183at 3324.136 kb on + strandat 3324.137 kb on - strandat 3324.139 kb on + strandat 3324.146 kb on - strandat 3324.146 kb on - strandat 3324.178 kb on + strandat 3324.178 kb on + strandat 3324.178 kb on + strandat 3324.178 kb on + strandat 3324.179 kb on - strandat 3324.179 kb on - strandat 3324.179 kb on - strandat 3324.179 kb on - strandat 3324.179 kb on - strandat 3324.234 kb on - strandat 3324.234 kb on - strandat 3324.234 kb on - strandat 3324.238 kb on + strandat 3324.238 kb on + strandat 3324.238 kb on + strandat 3324.238 kb on + strandat 3324.239 kb on - strandat 3324.251 kb on + strandat 3324.251 kb on + strandat 3324.251 kb on + strandat 3324.251 kb on + strandat 3324.252 kb on - strandat 3324.252 kb on - strandat 3324.252 kb on - strandat 3324.252 kb on - strandat 3324.252 kb on - strandat 3324.252 kb on - strandat 3324.340 kb on + strand, within ECD_03184at 3324.341 kb on - strand, within ECD_03184at 3324.342 kb on + strand, within ECD_03184at 3324.394 kb on + strand, within ECD_03184at 3324.395 kb on - strand, within ECD_03184at 3324.395 kb on - strand, within ECD_03184at 3324.514 kb on - strand, within ECD_03184at 3324.526 kb on + strand, within ECD_03184at 3324.527 kb on - strand, within ECD_03184at 3324.530 kb on + strand, within ECD_03184at 3324.531 kb on - strand, within ECD_03184at 3324.531 kb on - strand, within ECD_03184at 3324.574 kb on - strand, within ECD_03184at 3324.589 kb on + strand, within ECD_03184at 3324.589 kb on + strand, within ECD_03184at 3324.590 kb on - strand, within ECD_03184at 3324.590 kb on - strand, within ECD_03184at 3324.593 kb on + strand, within ECD_03184at 3324.593 kb on + strand, within ECD_03184at 3324.593 kb on + strand, within ECD_03184at 3324.593 kb on + strand, within ECD_03184at 3324.594 kb on - strand, within ECD_03184at 3324.710 kb on + strand, within ECD_03184at 3324.710 kb on + strand, within ECD_03184at 3324.711 kb on - strand, within ECD_03184at 3324.721 kb on - strand, within ECD_03184at 3324.727 kb on + strand, within ECD_03184at 3324.727 kb on + strand, within ECD_03184at 3324.727 kb on + strand, within ECD_03184at 3324.727 kb on + strand, within ECD_03184at 3324.727 kb on + strand, within ECD_03184at 3324.730 kb on + strand, within ECD_03184at 3324.731 kb on - strand, within ECD_03184at 3324.731 kb on - strand, within ECD_03184at 3324.731 kb on - strand, within ECD_03184at 3324.761 kb on + strand, within ECD_03184at 3324.762 kb on - strand, within ECD_03184at 3324.795 kb on + strand, within ECD_03184at 3324.823 kb on - strand, within ECD_03184at 3324.898 kb on + strand, within ECD_03184at 3324.898 kb on + strand, within ECD_03184at 3324.899 kb on - strand, within ECD_03184at 3324.959 kb on + strand, within ECD_03184at 3324.959 kb on + strand, within ECD_03184at 3324.965 kb on + strand, within ECD_03184at 3324.966 kb on - strand, within ECD_03184at 3324.966 kb on - strand, within ECD_03184at 3325.015 kb on - strand, within ECD_03184at 3325.053 kb on + strand, within ECD_03184at 3325.080 kb on + strand, within ECD_03184at 3325.105 kb on - strand, within ECD_03184at 3325.111 kb on + strand, within ECD_03184at 3325.111 kb on + strand, within ECD_03184at 3325.147 kb on + strand, within ECD_03184at 3325.161 kb on + strand, within ECD_03184at 3325.162 kb on - strand, within ECD_03184at 3325.162 kb on - strand, within ECD_03184at 3325.203 kb on - strandat 3325.237 kb on + strandat 3325.238 kb on - strandat 3325.238 kb on - strandat 3325.291 kb on + strandat 3325.292 kb on - strandat 3325.303 kb on - strandat 3325.416 kb on + strand, within ECD_03185at 3325.429 kb on + strand, within ECD_03185at 3325.429 kb on + strand, within ECD_03185at 3325.429 kb on + strand, within ECD_03185at 3325.429 kb on + strand, within ECD_03185at 3325.433 kb on + strand, within ECD_03185at 3325.433 kb on + strand, within ECD_03185at 3325.434 kb on - strand, within ECD_03185at 3325.434 kb on - strand, within ECD_03185at 3325.552 kb on + strand, within ECD_03185at 3325.553 kb on - strand, within ECD_03185at 3325.616 kb on - strand, within ECD_03185at 3325.688 kb on + strand, within ECD_03185at 3325.689 kb on - strand, within ECD_03185at 3325.689 kb on - strand, within ECD_03185at 3325.689 kb on - strand, within ECD_03185at 3325.689 kb on - strand, within ECD_03185at 3325.776 kb on - strandat 3325.935 kb on + strand, within ECD_03186at 3325.935 kb on + strand, within ECD_03186at 3325.935 kb on + strand, within ECD_03186at 3325.936 kb on - strand, within ECD_03186at 3325.936 kb on - strand, within ECD_03186at 3325.936 kb on - strand, within ECD_03186at 3325.936 kb on - strand, within ECD_03186at 3326.024 kb on - strand, within ECD_03186at 3326.117 kb on + strand, within ECD_03186at 3326.118 kb on - strand, within ECD_03186at 3326.118 kb on - strand, within ECD_03186at 3326.121 kb on + strand, within ECD_03186at 3326.121 kb on + strand, within ECD_03186at 3326.161 kb on + strand, within ECD_03186at 3326.200 kb on + strand, within ECD_03186at 3326.217 kb on - strand, within ECD_03186at 3326.258 kb on + strand, within ECD_03186at 3326.258 kb on + strand, within ECD_03186at 3326.306 kb on + strand, within ECD_03186

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,323,163 + +0.0
3,323,195 + +1.0
3,323,195 + -0.2
3,323,196 - -0.9
3,323,196 - +0.5
3,323,196 - +0.1
3,323,204 + +0.5
3,323,205 - +0.3
3,323,280 - ECD_03183 0.12 -0.0
3,323,302 + ECD_03183 0.15 +0.4
3,323,308 - ECD_03183 0.15 +0.3
3,323,355 + ECD_03183 0.20 -0.0
3,323,535 - ECD_03183 0.38 +0.9
3,323,535 - ECD_03183 0.38 -0.1
3,323,608 + ECD_03183 0.46 +0.2
3,323,608 + ECD_03183 0.46 -0.0
3,323,610 + ECD_03183 0.46 +0.1
3,323,610 + ECD_03183 0.46 -0.7
3,323,652 + ECD_03183 0.50 +0.0
3,323,721 - ECD_03183 0.57 -0.5
3,323,721 - ECD_03183 0.57 +0.9
3,323,721 - ECD_03183 0.57 -0.1
3,323,729 + ECD_03183 0.58 -0.4
3,323,738 + ECD_03183 0.59 -0.7
3,323,753 - ECD_03183 0.60 -0.3
3,323,771 - ECD_03183 0.62 +0.3
3,323,799 + ECD_03183 0.65 -0.1
3,323,800 - ECD_03183 0.65 -0.6
3,323,811 + ECD_03183 0.66 -0.4
3,323,812 - ECD_03183 0.66 -0.7
3,323,812 - ECD_03183 0.66 -0.1
3,323,814 + ECD_03183 0.67 -0.0
3,323,815 - ECD_03183 0.67 -1.4
3,323,832 + ECD_03183 0.68 -0.2
3,323,853 - ECD_03183 0.71 -0.4
3,323,921 + ECD_03183 0.78 -0.7
3,324,012 + ECD_03183 0.87 +0.3
3,324,042 + ECD_03183 0.90 +0.7
3,324,136 + +0.9
3,324,137 - +0.1
3,324,139 + +0.6
3,324,146 - +0.9
3,324,146 - -1.5
3,324,178 + +0.4
3,324,178 + +0.3
3,324,178 + +0.6
3,324,178 + -0.5
3,324,179 - -0.2
3,324,179 - +0.1
3,324,179 - +0.4
3,324,179 - -0.3
3,324,179 - +0.6
3,324,234 - +0.4
3,324,234 - +0.6
3,324,234 - +0.7
3,324,238 + -0.8
3,324,238 + +1.0
3,324,238 + +0.1
3,324,238 + +0.6
3,324,239 - +0.1
3,324,251 + +1.1
3,324,251 + +0.1
3,324,251 + -0.9
3,324,251 + +0.1
3,324,252 - +0.2
3,324,252 - -0.2
3,324,252 - -0.3
3,324,252 - +0.1
3,324,252 - -0.1
3,324,252 - +0.3
3,324,340 + ECD_03184 0.16 +0.7
3,324,341 - ECD_03184 0.16 -0.1
3,324,342 + ECD_03184 0.16 -0.0
3,324,394 + ECD_03184 0.20 +1.4
3,324,395 - ECD_03184 0.21 +0.8
3,324,395 - ECD_03184 0.21 +0.2
3,324,514 - ECD_03184 0.31 +0.4
3,324,526 + ECD_03184 0.32 +0.4
3,324,527 - ECD_03184 0.32 -0.1
3,324,530 + ECD_03184 0.32 +0.0
3,324,531 - ECD_03184 0.32 +0.9
3,324,531 - ECD_03184 0.32 -0.5
3,324,574 - ECD_03184 0.36 +0.6
3,324,589 + ECD_03184 0.37 -0.4
3,324,589 + ECD_03184 0.37 -0.7
3,324,590 - ECD_03184 0.37 -0.1
3,324,590 - ECD_03184 0.37 +0.4
3,324,593 + ECD_03184 0.38 +0.1
3,324,593 + ECD_03184 0.38 +1.0
3,324,593 + ECD_03184 0.38 +1.3
3,324,593 + ECD_03184 0.38 +0.5
3,324,594 - ECD_03184 0.38 +0.2
3,324,710 + ECD_03184 0.48 +0.5
3,324,710 + ECD_03184 0.48 -0.1
3,324,711 - ECD_03184 0.48 +0.6
3,324,721 - ECD_03184 0.49 -0.7
3,324,727 + ECD_03184 0.49 +0.8
3,324,727 + ECD_03184 0.49 +0.4
3,324,727 + ECD_03184 0.49 +0.0
3,324,727 + ECD_03184 0.49 +0.1
3,324,727 + ECD_03184 0.49 +1.4
3,324,730 + ECD_03184 0.49 +0.2
3,324,731 - ECD_03184 0.49 +0.6
3,324,731 - ECD_03184 0.49 -0.7
3,324,731 - ECD_03184 0.49 +1.4
3,324,761 + ECD_03184 0.52 +0.8
3,324,762 - ECD_03184 0.52 +1.0
3,324,795 + ECD_03184 0.55 +0.3
3,324,823 - ECD_03184 0.57 -0.3
3,324,898 + ECD_03184 0.64 +0.2
3,324,898 + ECD_03184 0.64 +0.2
3,324,899 - ECD_03184 0.64 -1.0
3,324,959 + ECD_03184 0.69 -0.5
3,324,959 + ECD_03184 0.69 +0.9
3,324,965 + ECD_03184 0.70 -0.5
3,324,966 - ECD_03184 0.70 -0.1
3,324,966 - ECD_03184 0.70 +0.5
3,325,015 - ECD_03184 0.74 -0.8
3,325,053 + ECD_03184 0.77 +0.3
3,325,080 + ECD_03184 0.79 +0.1
3,325,105 - ECD_03184 0.82 +0.1
3,325,111 + ECD_03184 0.82 -0.0
3,325,111 + ECD_03184 0.82 +0.1
3,325,147 + ECD_03184 0.85 -1.6
3,325,161 + ECD_03184 0.86 +0.2
3,325,162 - ECD_03184 0.86 -0.1
3,325,162 - ECD_03184 0.86 -0.0
3,325,203 - +0.3
3,325,237 + -0.1
3,325,238 - +0.4
3,325,238 - +1.6
3,325,291 + +0.5
3,325,292 - +0.3
3,325,303 - -0.8
3,325,416 + ECD_03185 0.22 -0.1
3,325,429 + ECD_03185 0.24 +0.3
3,325,429 + ECD_03185 0.24 -0.4
3,325,429 + ECD_03185 0.24 +0.4
3,325,429 + ECD_03185 0.24 +0.5
3,325,433 + ECD_03185 0.25 +0.2
3,325,433 + ECD_03185 0.25 -0.8
3,325,434 - ECD_03185 0.26 +1.1
3,325,434 - ECD_03185 0.26 -0.1
3,325,552 + ECD_03185 0.51 +0.2
3,325,553 - ECD_03185 0.51 +0.5
3,325,616 - ECD_03185 0.65 -0.2
3,325,688 + ECD_03185 0.81 +0.0
3,325,689 - ECD_03185 0.81 +0.2
3,325,689 - ECD_03185 0.81 -0.4
3,325,689 - ECD_03185 0.81 +0.7
3,325,689 - ECD_03185 0.81 +0.2
3,325,776 - -0.0
3,325,935 + ECD_03186 0.23 +1.2
3,325,935 + ECD_03186 0.23 +0.6
3,325,935 + ECD_03186 0.23 +0.6
3,325,936 - ECD_03186 0.23 +0.5
3,325,936 - ECD_03186 0.23 +0.3
3,325,936 - ECD_03186 0.23 -0.2
3,325,936 - ECD_03186 0.23 +0.2
3,326,024 - ECD_03186 0.36 -0.2
3,326,117 + ECD_03186 0.50 -0.5
3,326,118 - ECD_03186 0.50 -0.1
3,326,118 - ECD_03186 0.50 -0.7
3,326,121 + ECD_03186 0.51 +0.2
3,326,121 + ECD_03186 0.51 -0.1
3,326,161 + ECD_03186 0.57 -0.1
3,326,200 + ECD_03186 0.62 -0.5
3,326,217 - ECD_03186 0.65 -0.0
3,326,258 + ECD_03186 0.71 +0.5
3,326,258 + ECD_03186 0.71 +0.2
3,326,306 + ECD_03186 0.78 -0.5

Or see this region's nucleotide sequence