Strain Fitness in Escherichia coli BL21 around ECD_03096

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03095 and ECD_03096 are separated by 61 nucleotidesECD_03096 and ECD_03097 are separated by 434 nucleotides ECD_03095: ECD_03095 - serine endoprotease, periplasmic, at 3,243,363 to 3,244,430 _03095 ECD_03096: ECD_03096 - malate dehydrogenase, NAD(P)-binding, at 3,244,492 to 3,245,430 _03096 ECD_03097: ECD_03097 - l-arginine-responsive arginine metabolism regulon transcriptional regulator, at 3,245,865 to 3,246,335 _03097 Position (kb) 3244 3245 3246Strain fitness (log2 ratio) -2 -1 0 1 2at 3244.428 kb on + strandat 3244.428 kb on + strandat 3244.494 kb on - strandat 3244.494 kb on - strandat 3244.753 kb on - strand, within ECD_03096at 3245.082 kb on + strand, within ECD_03096at 3245.086 kb on - strand, within ECD_03096at 3245.334 kb on - strand, within ECD_03096at 3245.378 kb on - strandat 3245.378 kb on - strandat 3245.443 kb on - strandat 3245.446 kb on - strandat 3245.447 kb on + strandat 3245.488 kb on - strandat 3245.554 kb on + strandat 3245.555 kb on - strandat 3245.555 kb on - strandat 3245.562 kb on + strandat 3245.563 kb on - strandat 3245.563 kb on - strandat 3245.584 kb on - strandat 3245.584 kb on - strandat 3245.584 kb on - strandat 3245.588 kb on + strandat 3245.589 kb on - strandat 3245.592 kb on + strandat 3245.593 kb on - strandat 3245.608 kb on - strandat 3245.643 kb on + strandat 3245.643 kb on + strandat 3245.643 kb on + strandat 3245.643 kb on + strandat 3245.644 kb on - strandat 3245.644 kb on - strandat 3245.644 kb on - strandat 3245.644 kb on - strandat 3245.644 kb on - strandat 3245.644 kb on - strandat 3245.645 kb on + strandat 3245.645 kb on + strandat 3245.645 kb on + strandat 3245.645 kb on + strandat 3245.646 kb on - strandat 3245.646 kb on - strandat 3245.776 kb on + strandat 3245.832 kb on + strandat 3245.833 kb on - strandat 3245.840 kb on + strandat 3245.864 kb on + strandat 3245.865 kb on - strandat 3245.898 kb on - strandat 3245.898 kb on - strandat 3245.914 kb on + strand, within ECD_03097at 3245.984 kb on + strand, within ECD_03097at 3245.984 kb on + strand, within ECD_03097at 3245.984 kb on + strand, within ECD_03097at 3245.985 kb on - strand, within ECD_03097at 3245.987 kb on + strand, within ECD_03097at 3245.988 kb on - strand, within ECD_03097at 3246.035 kb on + strand, within ECD_03097at 3246.088 kb on + strand, within ECD_03097at 3246.261 kb on - strand, within ECD_03097at 3246.333 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
3,244,428 + -0.1
3,244,428 + -0.2
3,244,494 - -0.2
3,244,494 - +0.4
3,244,753 - ECD_03096 0.28 -0.1
3,245,082 + ECD_03096 0.63 -0.0
3,245,086 - ECD_03096 0.63 +0.7
3,245,334 - ECD_03096 0.90 +0.9
3,245,378 - +0.8
3,245,378 - +0.0
3,245,443 - +0.1
3,245,446 - +1.1
3,245,447 + +0.2
3,245,488 - -0.2
3,245,554 + +0.6
3,245,555 - +0.3
3,245,555 - +0.0
3,245,562 + -0.9
3,245,563 - +0.1
3,245,563 - +0.1
3,245,584 - +0.5
3,245,584 - +0.2
3,245,584 - +0.2
3,245,588 + +1.0
3,245,589 - -0.4
3,245,592 + -0.2
3,245,593 - -0.4
3,245,608 - +0.3
3,245,643 + -0.6
3,245,643 + -0.5
3,245,643 + -0.9
3,245,643 + +0.1
3,245,644 - +0.3
3,245,644 - +0.2
3,245,644 - +0.3
3,245,644 - +0.7
3,245,644 - -1.1
3,245,644 - +0.0
3,245,645 + -0.3
3,245,645 + -0.4
3,245,645 + -0.4
3,245,645 + -0.2
3,245,646 - +0.1
3,245,646 - -0.1
3,245,776 + +1.0
3,245,832 + +0.0
3,245,833 - +0.4
3,245,840 + +0.2
3,245,864 + -1.6
3,245,865 - +1.2
3,245,898 - +0.1
3,245,898 - -2.2
3,245,914 + ECD_03097 0.10 +0.3
3,245,984 + ECD_03097 0.25 +0.8
3,245,984 + ECD_03097 0.25 +0.4
3,245,984 + ECD_03097 0.25 -0.6
3,245,985 - ECD_03097 0.25 -0.3
3,245,987 + ECD_03097 0.26 +0.2
3,245,988 - ECD_03097 0.26 +1.0
3,246,035 + ECD_03097 0.36 -0.7
3,246,088 + ECD_03097 0.47 -1.3
3,246,261 - ECD_03097 0.84 +2.2
3,246,333 + +0.6

Or see this region's nucleotide sequence