Strain Fitness in Escherichia coli BL21 around ECD_03023

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03020 and ECD_03021 overlap by 21 nucleotidesECD_03021 and ECD_03022 are separated by 50 nucleotidesECD_03022 and ECD_03023 overlap by 14 nucleotidesECD_03023 and ECD_03024 overlap by 7 nucleotidesECD_03024 and ECD_03025 are separated by 208 nucleotides ECD_03020: ECD_03020 - stress-resistance protein, at 3,167,473 to 3,167,991 _03020 ECD_03021: ECD_03021 - UPF0306 family protein, at 3,167,971 to 3,168,414 _03021 ECD_03022: ECD_03022 - GIY-YIG nuclease superfamily protein, at 3,168,465 to 3,168,767 _03022 ECD_03023: ECD_03023 - GNAT family putative N-acetyltransferase, at 3,168,754 to 3,169,257 _03023 ECD_03024: ECD_03024 - SCP-2 sterol transfer family protein, at 3,169,251 to 3,169,775 _03024 ECD_03025: ECD_03025 - U32 peptidase family protein, at 3,169,984 to 3,170,979 _03025 Position (kb) 3168 3169 3170Strain fitness (log2 ratio) -2 -1 0 1at 3168.214 kb on + strand, within ECD_03021at 3168.314 kb on + strand, within ECD_03021at 3168.428 kb on + strandat 3168.429 kb on - strandat 3168.430 kb on + strandat 3168.431 kb on - strandat 3168.431 kb on - strandat 3168.447 kb on + strandat 3168.447 kb on + strandat 3168.483 kb on + strandat 3168.506 kb on + strand, within ECD_03022at 3168.507 kb on - strand, within ECD_03022at 3168.730 kb on + strand, within ECD_03022at 3168.755 kb on + strandat 3168.908 kb on + strand, within ECD_03023at 3168.908 kb on + strand, within ECD_03023at 3168.909 kb on - strand, within ECD_03023at 3169.092 kb on - strand, within ECD_03023at 3169.267 kb on - strandat 3169.396 kb on + strand, within ECD_03024at 3169.396 kb on + strand, within ECD_03024at 3169.397 kb on - strand, within ECD_03024at 3169.598 kb on + strand, within ECD_03024at 3169.598 kb on + strand, within ECD_03024at 3169.598 kb on + strand, within ECD_03024at 3169.598 kb on + strand, within ECD_03024at 3169.599 kb on - strand, within ECD_03024at 3169.599 kb on - strand, within ECD_03024at 3169.599 kb on - strand, within ECD_03024at 3169.599 kb on - strand, within ECD_03024at 3169.602 kb on + strand, within ECD_03024at 3169.666 kb on - strand, within ECD_03024at 3169.751 kb on + strandat 3169.783 kb on - strandat 3169.783 kb on - strandat 3169.807 kb on - strandat 3169.839 kb on - strandat 3169.839 kb on - strandat 3169.879 kb on + strandat 3169.880 kb on - strandat 3169.880 kb on - strandat 3169.897 kb on - strandat 3170.056 kb on + strandat 3170.178 kb on + strand, within ECD_03025

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,168,214 + ECD_03021 0.55 +0.3
3,168,314 + ECD_03021 0.77 +0.8
3,168,428 + +0.8
3,168,429 - -0.1
3,168,430 + -2.2
3,168,431 - +0.2
3,168,431 - -0.7
3,168,447 + -0.4
3,168,447 + -1.9
3,168,483 + -0.1
3,168,506 + ECD_03022 0.14 +0.3
3,168,507 - ECD_03022 0.14 -0.8
3,168,730 + ECD_03022 0.87 +1.0
3,168,755 + -0.9
3,168,908 + ECD_03023 0.31 +1.4
3,168,908 + ECD_03023 0.31 +1.1
3,168,909 - ECD_03023 0.31 +0.8
3,169,092 - ECD_03023 0.67 +0.6
3,169,267 - -0.9
3,169,396 + ECD_03024 0.28 +0.6
3,169,396 + ECD_03024 0.28 -0.1
3,169,397 - ECD_03024 0.28 -0.7
3,169,598 + ECD_03024 0.66 +0.5
3,169,598 + ECD_03024 0.66 +0.3
3,169,598 + ECD_03024 0.66 +0.4
3,169,598 + ECD_03024 0.66 -0.4
3,169,599 - ECD_03024 0.66 -1.2
3,169,599 - ECD_03024 0.66 +0.1
3,169,599 - ECD_03024 0.66 +0.1
3,169,599 - ECD_03024 0.66 -0.8
3,169,602 + ECD_03024 0.67 -0.3
3,169,666 - ECD_03024 0.79 +0.0
3,169,751 + -0.5
3,169,783 - -0.8
3,169,783 - -0.2
3,169,807 - +0.2
3,169,839 - +0.2
3,169,839 - -0.0
3,169,879 + +1.2
3,169,880 - -0.1
3,169,880 - -0.1
3,169,897 - -0.4
3,170,056 + -0.7
3,170,178 + ECD_03025 0.19 -0.3

Or see this region's nucleotide sequence