Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03020 and ECD_03021 overlap by 21 nucleotides ECD_03021 and ECD_03022 are separated by 50 nucleotides ECD_03022 and ECD_03023 overlap by 14 nucleotides ECD_03023 and ECD_03024 overlap by 7 nucleotides ECD_03024 and ECD_03025 are separated by 208 nucleotides
ECD_03020: ECD_03020 - stress-resistance protein, at 3,167,473 to 3,167,991
_03020
ECD_03021: ECD_03021 - UPF0306 family protein, at 3,167,971 to 3,168,414
_03021
ECD_03022: ECD_03022 - GIY-YIG nuclease superfamily protein, at 3,168,465 to 3,168,767
_03022
ECD_03023: ECD_03023 - GNAT family putative N-acetyltransferase, at 3,168,754 to 3,169,257
_03023
ECD_03024: ECD_03024 - SCP-2 sterol transfer family protein, at 3,169,251 to 3,169,775
_03024
ECD_03025: ECD_03025 - U32 peptidase family protein, at 3,169,984 to 3,170,979
_03025
Position (kb)
3168
3169
3170 Strain fitness (log2 ratio)
-2
-1
0
1 at 3168.214 kb on + strand, within ECD_03021 at 3168.314 kb on + strand, within ECD_03021 at 3168.428 kb on + strand at 3168.429 kb on - strand at 3168.430 kb on + strand at 3168.431 kb on - strand at 3168.431 kb on - strand at 3168.447 kb on + strand at 3168.447 kb on + strand at 3168.483 kb on + strand at 3168.506 kb on + strand, within ECD_03022 at 3168.507 kb on - strand, within ECD_03022 at 3168.730 kb on + strand, within ECD_03022 at 3168.755 kb on + strand at 3168.908 kb on + strand, within ECD_03023 at 3168.908 kb on + strand, within ECD_03023 at 3168.909 kb on - strand, within ECD_03023 at 3169.092 kb on - strand, within ECD_03023 at 3169.267 kb on - strand at 3169.396 kb on + strand, within ECD_03024 at 3169.396 kb on + strand, within ECD_03024 at 3169.397 kb on - strand, within ECD_03024 at 3169.598 kb on + strand, within ECD_03024 at 3169.598 kb on + strand, within ECD_03024 at 3169.598 kb on + strand, within ECD_03024 at 3169.598 kb on + strand, within ECD_03024 at 3169.599 kb on - strand, within ECD_03024 at 3169.599 kb on - strand, within ECD_03024 at 3169.599 kb on - strand, within ECD_03024 at 3169.599 kb on - strand, within ECD_03024 at 3169.602 kb on + strand, within ECD_03024 at 3169.666 kb on - strand, within ECD_03024 at 3169.751 kb on + strand at 3169.783 kb on - strand at 3169.783 kb on - strand at 3169.807 kb on - strand at 3169.839 kb on - strand at 3169.839 kb on - strand at 3169.879 kb on + strand at 3169.880 kb on - strand at 3169.880 kb on - strand at 3169.897 kb on - strand at 3170.056 kb on + strand at 3170.178 kb on + strand, within ECD_03025
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,168,214 + ECD_03021 0.55 +0.3 3,168,314 + ECD_03021 0.77 +0.8 3,168,428 + +0.8 3,168,429 - -0.1 3,168,430 + -2.2 3,168,431 - +0.2 3,168,431 - -0.7 3,168,447 + -0.4 3,168,447 + -1.9 3,168,483 + -0.1 3,168,506 + ECD_03022 0.14 +0.3 3,168,507 - ECD_03022 0.14 -0.8 3,168,730 + ECD_03022 0.87 +1.0 3,168,755 + -0.9 3,168,908 + ECD_03023 0.31 +1.4 3,168,908 + ECD_03023 0.31 +1.1 3,168,909 - ECD_03023 0.31 +0.8 3,169,092 - ECD_03023 0.67 +0.6 3,169,267 - -0.9 3,169,396 + ECD_03024 0.28 +0.6 3,169,396 + ECD_03024 0.28 -0.1 3,169,397 - ECD_03024 0.28 -0.7 3,169,598 + ECD_03024 0.66 +0.5 3,169,598 + ECD_03024 0.66 +0.3 3,169,598 + ECD_03024 0.66 +0.4 3,169,598 + ECD_03024 0.66 -0.4 3,169,599 - ECD_03024 0.66 -1.2 3,169,599 - ECD_03024 0.66 +0.1 3,169,599 - ECD_03024 0.66 +0.1 3,169,599 - ECD_03024 0.66 -0.8 3,169,602 + ECD_03024 0.67 -0.3 3,169,666 - ECD_03024 0.79 +0.0 3,169,751 + -0.5 3,169,783 - -0.8 3,169,783 - -0.2 3,169,807 - +0.2 3,169,839 - +0.2 3,169,839 - -0.0 3,169,879 + +1.2 3,169,880 - -0.1 3,169,880 - -0.1 3,169,897 - -0.4 3,170,056 + -0.7 3,170,178 + ECD_03025 0.19 -0.3
Or see this region's nucleotide sequence