Strain Fitness in Escherichia coli BL21 around ECD_03021

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03019 and ECD_03020 are separated by 127 nucleotidesECD_03020 and ECD_03021 overlap by 21 nucleotidesECD_03021 and ECD_03022 are separated by 50 nucleotidesECD_03022 and ECD_03023 overlap by 14 nucleotidesECD_03023 and ECD_03024 overlap by 7 nucleotides ECD_03019: ECD_03019 - putative nucleoside-diphosphate-sugar epimerase, at 3,166,710 to 3,167,345 _03019 ECD_03020: ECD_03020 - stress-resistance protein, at 3,167,473 to 3,167,991 _03020 ECD_03021: ECD_03021 - UPF0306 family protein, at 3,167,971 to 3,168,414 _03021 ECD_03022: ECD_03022 - GIY-YIG nuclease superfamily protein, at 3,168,465 to 3,168,767 _03022 ECD_03023: ECD_03023 - GNAT family putative N-acetyltransferase, at 3,168,754 to 3,169,257 _03023 ECD_03024: ECD_03024 - SCP-2 sterol transfer family protein, at 3,169,251 to 3,169,775 _03024 Position (kb) 3167 3168 3169Strain fitness (log2 ratio) -2 -1 0 1at 3166.981 kb on + strand, within ECD_03019at 3166.982 kb on - strand, within ECD_03019at 3167.023 kb on - strand, within ECD_03019at 3167.030 kb on + strand, within ECD_03019at 3167.030 kb on + strand, within ECD_03019at 3167.031 kb on - strand, within ECD_03019at 3167.031 kb on - strand, within ECD_03019at 3167.031 kb on - strand, within ECD_03019at 3167.031 kb on - strand, within ECD_03019at 3167.031 kb on - strand, within ECD_03019at 3167.096 kb on + strand, within ECD_03019at 3167.357 kb on + strandat 3167.402 kb on - strandat 3167.404 kb on + strandat 3167.404 kb on + strandat 3167.404 kb on + strandat 3167.404 kb on + strandat 3167.405 kb on - strandat 3167.416 kb on + strandat 3167.416 kb on + strandat 3167.416 kb on + strandat 3167.416 kb on + strandat 3167.417 kb on - strandat 3167.417 kb on - strandat 3167.417 kb on - strandat 3167.417 kb on - strandat 3167.526 kb on + strand, within ECD_03020at 3167.637 kb on + strand, within ECD_03020at 3167.707 kb on + strand, within ECD_03020at 3167.707 kb on + strand, within ECD_03020at 3167.708 kb on - strand, within ECD_03020at 3167.708 kb on - strand, within ECD_03020at 3168.214 kb on + strand, within ECD_03021at 3168.314 kb on + strand, within ECD_03021at 3168.428 kb on + strandat 3168.429 kb on - strandat 3168.430 kb on + strandat 3168.431 kb on - strandat 3168.431 kb on - strandat 3168.447 kb on + strandat 3168.447 kb on + strandat 3168.483 kb on + strandat 3168.506 kb on + strand, within ECD_03022at 3168.507 kb on - strand, within ECD_03022at 3168.730 kb on + strand, within ECD_03022at 3168.755 kb on + strandat 3168.908 kb on + strand, within ECD_03023at 3168.908 kb on + strand, within ECD_03023at 3168.909 kb on - strand, within ECD_03023at 3169.092 kb on - strand, within ECD_03023at 3169.267 kb on - strandat 3169.396 kb on + strand, within ECD_03024at 3169.396 kb on + strand, within ECD_03024at 3169.397 kb on - strand, within ECD_03024

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,166,981 + ECD_03019 0.43 +0.0
3,166,982 - ECD_03019 0.43 +0.4
3,167,023 - ECD_03019 0.49 +0.3
3,167,030 + ECD_03019 0.50 -1.2
3,167,030 + ECD_03019 0.50 -0.0
3,167,031 - ECD_03019 0.50 +0.2
3,167,031 - ECD_03019 0.50 +0.5
3,167,031 - ECD_03019 0.50 -1.3
3,167,031 - ECD_03019 0.50 +0.2
3,167,031 - ECD_03019 0.50 +0.0
3,167,096 + ECD_03019 0.61 -0.2
3,167,357 + +0.3
3,167,402 - +0.6
3,167,404 + +0.6
3,167,404 + +0.8
3,167,404 + +0.5
3,167,404 + +0.1
3,167,405 - -0.2
3,167,416 + +0.3
3,167,416 + -1.7
3,167,416 + -0.1
3,167,416 + +0.0
3,167,417 - -0.0
3,167,417 - -0.6
3,167,417 - -0.3
3,167,417 - -0.1
3,167,526 + ECD_03020 0.10 +0.4
3,167,637 + ECD_03020 0.32 -0.4
3,167,707 + ECD_03020 0.45 +0.4
3,167,707 + ECD_03020 0.45 -0.2
3,167,708 - ECD_03020 0.45 +0.1
3,167,708 - ECD_03020 0.45 -0.3
3,168,214 + ECD_03021 0.55 +0.3
3,168,314 + ECD_03021 0.77 +0.8
3,168,428 + +0.8
3,168,429 - -0.1
3,168,430 + -2.2
3,168,431 - +0.2
3,168,431 - -0.7
3,168,447 + -0.4
3,168,447 + -1.9
3,168,483 + -0.1
3,168,506 + ECD_03022 0.14 +0.3
3,168,507 - ECD_03022 0.14 -0.8
3,168,730 + ECD_03022 0.87 +1.0
3,168,755 + -0.9
3,168,908 + ECD_03023 0.31 +1.4
3,168,908 + ECD_03023 0.31 +1.1
3,168,909 - ECD_03023 0.31 +0.8
3,169,092 - ECD_03023 0.67 +0.6
3,169,267 - -0.9
3,169,396 + ECD_03024 0.28 +0.6
3,169,396 + ECD_03024 0.28 -0.1
3,169,397 - ECD_03024 0.28 -0.7

Or see this region's nucleotide sequence