Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03019 and ECD_03020 are separated by 127 nucleotides ECD_03020 and ECD_03021 overlap by 21 nucleotides ECD_03021 and ECD_03022 are separated by 50 nucleotides ECD_03022 and ECD_03023 overlap by 14 nucleotides ECD_03023 and ECD_03024 overlap by 7 nucleotides
ECD_03019: ECD_03019 - putative nucleoside-diphosphate-sugar epimerase, at 3,166,710 to 3,167,345
_03019
ECD_03020: ECD_03020 - stress-resistance protein, at 3,167,473 to 3,167,991
_03020
ECD_03021: ECD_03021 - UPF0306 family protein, at 3,167,971 to 3,168,414
_03021
ECD_03022: ECD_03022 - GIY-YIG nuclease superfamily protein, at 3,168,465 to 3,168,767
_03022
ECD_03023: ECD_03023 - GNAT family putative N-acetyltransferase, at 3,168,754 to 3,169,257
_03023
ECD_03024: ECD_03024 - SCP-2 sterol transfer family protein, at 3,169,251 to 3,169,775
_03024
Position (kb)
3167
3168
3169 Strain fitness (log2 ratio)
-2
-1
0
1 at 3166.981 kb on + strand, within ECD_03019 at 3166.982 kb on - strand, within ECD_03019 at 3167.023 kb on - strand, within ECD_03019 at 3167.030 kb on + strand, within ECD_03019 at 3167.030 kb on + strand, within ECD_03019 at 3167.031 kb on - strand, within ECD_03019 at 3167.031 kb on - strand, within ECD_03019 at 3167.031 kb on - strand, within ECD_03019 at 3167.031 kb on - strand, within ECD_03019 at 3167.031 kb on - strand, within ECD_03019 at 3167.096 kb on + strand, within ECD_03019 at 3167.357 kb on + strand at 3167.402 kb on - strand at 3167.404 kb on + strand at 3167.404 kb on + strand at 3167.404 kb on + strand at 3167.404 kb on + strand at 3167.405 kb on - strand at 3167.416 kb on + strand at 3167.416 kb on + strand at 3167.416 kb on + strand at 3167.416 kb on + strand at 3167.417 kb on - strand at 3167.417 kb on - strand at 3167.417 kb on - strand at 3167.417 kb on - strand at 3167.526 kb on + strand, within ECD_03020 at 3167.637 kb on + strand, within ECD_03020 at 3167.707 kb on + strand, within ECD_03020 at 3167.707 kb on + strand, within ECD_03020 at 3167.708 kb on - strand, within ECD_03020 at 3167.708 kb on - strand, within ECD_03020 at 3168.214 kb on + strand, within ECD_03021 at 3168.314 kb on + strand, within ECD_03021 at 3168.428 kb on + strand at 3168.429 kb on - strand at 3168.430 kb on + strand at 3168.431 kb on - strand at 3168.431 kb on - strand at 3168.447 kb on + strand at 3168.447 kb on + strand at 3168.483 kb on + strand at 3168.506 kb on + strand, within ECD_03022 at 3168.507 kb on - strand, within ECD_03022 at 3168.730 kb on + strand, within ECD_03022 at 3168.755 kb on + strand at 3168.908 kb on + strand, within ECD_03023 at 3168.908 kb on + strand, within ECD_03023 at 3168.909 kb on - strand, within ECD_03023 at 3169.092 kb on - strand, within ECD_03023 at 3169.267 kb on - strand at 3169.396 kb on + strand, within ECD_03024 at 3169.396 kb on + strand, within ECD_03024 at 3169.397 kb on - strand, within ECD_03024
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 3,166,981 + ECD_03019 0.43 +0.0 3,166,982 - ECD_03019 0.43 +0.4 3,167,023 - ECD_03019 0.49 +0.3 3,167,030 + ECD_03019 0.50 -1.2 3,167,030 + ECD_03019 0.50 -0.0 3,167,031 - ECD_03019 0.50 +0.2 3,167,031 - ECD_03019 0.50 +0.5 3,167,031 - ECD_03019 0.50 -1.3 3,167,031 - ECD_03019 0.50 +0.2 3,167,031 - ECD_03019 0.50 +0.0 3,167,096 + ECD_03019 0.61 -0.2 3,167,357 + +0.3 3,167,402 - +0.6 3,167,404 + +0.6 3,167,404 + +0.8 3,167,404 + +0.5 3,167,404 + +0.1 3,167,405 - -0.2 3,167,416 + +0.3 3,167,416 + -1.7 3,167,416 + -0.1 3,167,416 + +0.0 3,167,417 - -0.0 3,167,417 - -0.6 3,167,417 - -0.3 3,167,417 - -0.1 3,167,526 + ECD_03020 0.10 +0.4 3,167,637 + ECD_03020 0.32 -0.4 3,167,707 + ECD_03020 0.45 +0.4 3,167,707 + ECD_03020 0.45 -0.2 3,167,708 - ECD_03020 0.45 +0.1 3,167,708 - ECD_03020 0.45 -0.3 3,168,214 + ECD_03021 0.55 +0.3 3,168,314 + ECD_03021 0.77 +0.8 3,168,428 + +0.8 3,168,429 - -0.1 3,168,430 + -2.2 3,168,431 - +0.2 3,168,431 - -0.7 3,168,447 + -0.4 3,168,447 + -1.9 3,168,483 + -0.1 3,168,506 + ECD_03022 0.14 +0.3 3,168,507 - ECD_03022 0.14 -0.8 3,168,730 + ECD_03022 0.87 +1.0 3,168,755 + -0.9 3,168,908 + ECD_03023 0.31 +1.4 3,168,908 + ECD_03023 0.31 +1.1 3,168,909 - ECD_03023 0.31 +0.8 3,169,092 - ECD_03023 0.67 +0.6 3,169,267 - -0.9 3,169,396 + ECD_03024 0.28 +0.6 3,169,396 + ECD_03024 0.28 -0.1 3,169,397 - ECD_03024 0.28 -0.7
Or see this region's nucleotide sequence