Strain Fitness in Escherichia coli BL21 around ECD_02943

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02942 and ECD_02943 are separated by 41 nucleotidesECD_02943 and ECD_02944 are separated by 218 nucleotides ECD_02942: ECD_02942 - putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent, at 3,085,576 to 3,086,955 _02942 ECD_02943: ECD_02943 - putative tRNA binding protein; putative tRNA corner chaperone, at 3,086,997 to 3,087,329 _02943 ECD_02944: ECD_02944 - transcriptional repressor, at 3,087,548 to 3,088,531 _02944 Position (kb) 3086 3087 3088Strain fitness (log2 ratio) -1 0 1at 3086.017 kb on - strand, within ECD_02942at 3086.088 kb on + strand, within ECD_02942at 3086.095 kb on - strand, within ECD_02942at 3086.176 kb on - strand, within ECD_02942at 3086.312 kb on + strand, within ECD_02942at 3086.313 kb on - strand, within ECD_02942at 3086.345 kb on + strand, within ECD_02942at 3086.349 kb on + strand, within ECD_02942at 3086.349 kb on + strand, within ECD_02942at 3086.349 kb on + strand, within ECD_02942at 3086.350 kb on - strand, within ECD_02942at 3086.350 kb on - strand, within ECD_02942at 3086.350 kb on - strand, within ECD_02942at 3086.350 kb on - strand, within ECD_02942at 3086.354 kb on + strand, within ECD_02942at 3086.354 kb on + strand, within ECD_02942at 3086.355 kb on - strand, within ECD_02942at 3086.355 kb on - strand, within ECD_02942at 3086.355 kb on - strand, within ECD_02942at 3086.393 kb on + strand, within ECD_02942at 3086.447 kb on + strand, within ECD_02942at 3086.447 kb on + strand, within ECD_02942at 3086.447 kb on + strand, within ECD_02942at 3086.447 kb on + strand, within ECD_02942at 3086.448 kb on - strand, within ECD_02942at 3086.448 kb on - strand, within ECD_02942at 3086.562 kb on + strand, within ECD_02942at 3086.562 kb on + strand, within ECD_02942at 3086.562 kb on + strand, within ECD_02942at 3086.563 kb on - strand, within ECD_02942at 3086.668 kb on - strand, within ECD_02942at 3086.781 kb on + strand, within ECD_02942at 3086.937 kb on - strandat 3086.937 kb on - strandat 3087.132 kb on + strand, within ECD_02943at 3087.133 kb on - strand, within ECD_02943at 3087.133 kb on - strand, within ECD_02943at 3087.175 kb on + strand, within ECD_02943at 3087.228 kb on + strand, within ECD_02943at 3087.229 kb on - strand, within ECD_02943at 3087.236 kb on - strand, within ECD_02943at 3087.314 kb on - strandat 3087.508 kb on - strandat 3087.559 kb on - strandat 3087.600 kb on + strandat 3087.601 kb on - strandat 3087.612 kb on + strandat 3087.612 kb on + strandat 3087.612 kb on + strandat 3087.613 kb on - strandat 3087.739 kb on + strand, within ECD_02944at 3087.739 kb on + strand, within ECD_02944at 3087.740 kb on - strand, within ECD_02944at 3087.740 kb on - strand, within ECD_02944at 3087.749 kb on - strand, within ECD_02944at 3087.752 kb on + strand, within ECD_02944at 3087.752 kb on + strand, within ECD_02944at 3087.752 kb on + strand, within ECD_02944at 3087.752 kb on + strand, within ECD_02944at 3087.752 kb on + strand, within ECD_02944at 3087.752 kb on + strand, within ECD_02944at 3087.752 kb on + strand, within ECD_02944at 3087.752 kb on + strand, within ECD_02944at 3087.753 kb on - strand, within ECD_02944at 3087.753 kb on - strand, within ECD_02944at 3087.759 kb on - strand, within ECD_02944at 3087.788 kb on + strand, within ECD_02944at 3087.789 kb on - strand, within ECD_02944at 3087.792 kb on - strand, within ECD_02944at 3087.873 kb on + strand, within ECD_02944at 3087.883 kb on + strand, within ECD_02944at 3087.903 kb on + strand, within ECD_02944at 3087.903 kb on + strand, within ECD_02944at 3087.903 kb on + strand, within ECD_02944at 3087.961 kb on + strand, within ECD_02944at 3087.961 kb on + strand, within ECD_02944at 3087.962 kb on - strand, within ECD_02944at 3087.962 kb on - strand, within ECD_02944at 3087.962 kb on - strand, within ECD_02944at 3087.962 kb on - strand, within ECD_02944at 3088.052 kb on + strand, within ECD_02944at 3088.052 kb on + strand, within ECD_02944at 3088.052 kb on + strand, within ECD_02944at 3088.053 kb on - strand, within ECD_02944at 3088.053 kb on - strand, within ECD_02944at 3088.053 kb on - strand, within ECD_02944at 3088.053 kb on - strand, within ECD_02944at 3088.053 kb on - strand, within ECD_02944at 3088.055 kb on - strand, within ECD_02944at 3088.076 kb on - strand, within ECD_02944at 3088.165 kb on - strand, within ECD_02944at 3088.211 kb on + strand, within ECD_02944

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,086,017 - ECD_02942 0.32 +0.1
3,086,088 + ECD_02942 0.37 -0.5
3,086,095 - ECD_02942 0.38 -0.1
3,086,176 - ECD_02942 0.43 +0.5
3,086,312 + ECD_02942 0.53 -1.6
3,086,313 - ECD_02942 0.53 -0.0
3,086,345 + ECD_02942 0.56 -0.2
3,086,349 + ECD_02942 0.56 +0.1
3,086,349 + ECD_02942 0.56 +0.9
3,086,349 + ECD_02942 0.56 +0.9
3,086,350 - ECD_02942 0.56 -0.0
3,086,350 - ECD_02942 0.56 +0.6
3,086,350 - ECD_02942 0.56 +0.4
3,086,350 - ECD_02942 0.56 +0.5
3,086,354 + ECD_02942 0.56 +0.3
3,086,354 + ECD_02942 0.56 +0.3
3,086,355 - ECD_02942 0.56 +1.4
3,086,355 - ECD_02942 0.56 +0.0
3,086,355 - ECD_02942 0.56 +0.4
3,086,393 + ECD_02942 0.59 -1.1
3,086,447 + ECD_02942 0.63 +0.6
3,086,447 + ECD_02942 0.63 +0.0
3,086,447 + ECD_02942 0.63 -0.2
3,086,447 + ECD_02942 0.63 +1.4
3,086,448 - ECD_02942 0.63 +0.0
3,086,448 - ECD_02942 0.63 +0.3
3,086,562 + ECD_02942 0.71 +0.8
3,086,562 + ECD_02942 0.71 +0.8
3,086,562 + ECD_02942 0.71 -0.2
3,086,563 - ECD_02942 0.72 +0.1
3,086,668 - ECD_02942 0.79 +0.6
3,086,781 + ECD_02942 0.87 +0.5
3,086,937 - +0.2
3,086,937 - -1.6
3,087,132 + ECD_02943 0.41 +1.0
3,087,133 - ECD_02943 0.41 +0.2
3,087,133 - ECD_02943 0.41 +0.4
3,087,175 + ECD_02943 0.53 +0.6
3,087,228 + ECD_02943 0.69 +0.2
3,087,229 - ECD_02943 0.70 +0.6
3,087,236 - ECD_02943 0.72 +0.4
3,087,314 - +0.1
3,087,508 - -0.1
3,087,559 - +0.5
3,087,600 + +0.6
3,087,601 - +0.5
3,087,612 + +0.7
3,087,612 + -0.9
3,087,612 + -0.2
3,087,613 - +0.2
3,087,739 + ECD_02944 0.19 -0.2
3,087,739 + ECD_02944 0.19 +1.0
3,087,740 - ECD_02944 0.20 +0.1
3,087,740 - ECD_02944 0.20 +0.5
3,087,749 - ECD_02944 0.20 +0.5
3,087,752 + ECD_02944 0.21 -0.2
3,087,752 + ECD_02944 0.21 +0.1
3,087,752 + ECD_02944 0.21 +0.2
3,087,752 + ECD_02944 0.21 +0.1
3,087,752 + ECD_02944 0.21 +1.1
3,087,752 + ECD_02944 0.21 -0.9
3,087,752 + ECD_02944 0.21 -0.4
3,087,752 + ECD_02944 0.21 -0.7
3,087,753 - ECD_02944 0.21 +0.4
3,087,753 - ECD_02944 0.21 +1.3
3,087,759 - ECD_02944 0.21 -0.6
3,087,788 + ECD_02944 0.24 +0.0
3,087,789 - ECD_02944 0.24 -0.9
3,087,792 - ECD_02944 0.25 +0.7
3,087,873 + ECD_02944 0.33 +0.4
3,087,883 + ECD_02944 0.34 -0.0
3,087,903 + ECD_02944 0.36 -0.4
3,087,903 + ECD_02944 0.36 -1.6
3,087,903 + ECD_02944 0.36 -0.9
3,087,961 + ECD_02944 0.42 +0.3
3,087,961 + ECD_02944 0.42 -0.6
3,087,962 - ECD_02944 0.42 -0.2
3,087,962 - ECD_02944 0.42 +0.5
3,087,962 - ECD_02944 0.42 +0.1
3,087,962 - ECD_02944 0.42 +0.6
3,088,052 + ECD_02944 0.51 -0.4
3,088,052 + ECD_02944 0.51 -0.6
3,088,052 + ECD_02944 0.51 +0.4
3,088,053 - ECD_02944 0.51 -0.3
3,088,053 - ECD_02944 0.51 -0.2
3,088,053 - ECD_02944 0.51 +1.4
3,088,053 - ECD_02944 0.51 +0.3
3,088,053 - ECD_02944 0.51 +0.3
3,088,055 - ECD_02944 0.52 +0.1
3,088,076 - ECD_02944 0.54 +1.1
3,088,165 - ECD_02944 0.63 -1.1
3,088,211 + ECD_02944 0.67 +0.6

Or see this region's nucleotide sequence