Strain Fitness in Escherichia coli BL21 around ECD_02919

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02918 and ECD_02919 are separated by 42 nucleotidesECD_02919 and ECD_02920 are separated by 268 nucleotidesECD_02920 and ECD_02921 are separated by 26 nucleotides ECD_02918: ECD_02918 - fimbrial protein, at 3,056,733 to 3,057,797 _02918 ECD_02919: ECD_02919 - motility and biofilm regulator, at 3,057,840 to 3,058,040 _02919 ECD_02920: ECD_02920 - DUF1449 family inner membrane protein, at 3,058,309 to 3,058,938 _02920 ECD_02921: ECD_02921 - PHB family membrane protein, function unknown, at 3,058,965 to 3,060,626 _02921 Position (kb) 3057 3058 3059Strain fitness (log2 ratio) -2 -1 0 1at 3057.038 kb on + strand, within ECD_02918at 3057.088 kb on + strand, within ECD_02918at 3057.119 kb on - strand, within ECD_02918at 3057.773 kb on - strandat 3057.795 kb on + strandat 3057.795 kb on + strandat 3057.806 kb on - strandat 3057.814 kb on + strandat 3057.838 kb on + strandat 3057.917 kb on + strand, within ECD_02919at 3058.014 kb on - strand, within ECD_02919at 3058.140 kb on - strandat 3058.144 kb on - strandat 3058.453 kb on - strand, within ECD_02920at 3058.632 kb on - strand, within ECD_02920at 3058.657 kb on + strand, within ECD_02920at 3058.723 kb on + strand, within ECD_02920at 3058.725 kb on + strand, within ECD_02920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
3,057,038 + ECD_02918 0.29 +0.3
3,057,088 + ECD_02918 0.33 +0.1
3,057,119 - ECD_02918 0.36 +0.0
3,057,773 - +0.3
3,057,795 + -0.7
3,057,795 + -0.2
3,057,806 - +0.4
3,057,814 + -0.1
3,057,838 + -0.5
3,057,917 + ECD_02919 0.38 +1.2
3,058,014 - ECD_02919 0.87 +0.7
3,058,140 - +0.2
3,058,144 - +0.5
3,058,453 - ECD_02920 0.23 -0.2
3,058,632 - ECD_02920 0.51 +1.0
3,058,657 + ECD_02920 0.55 +1.1
3,058,723 + ECD_02920 0.66 +0.4
3,058,725 + ECD_02920 0.66 -1.9

Or see this region's nucleotide sequence