Strain Fitness in Escherichia coli BL21 around ECD_02908

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02907 and ECD_02908 overlap by 1 nucleotidesECD_02908 and ECD_02909 overlap by 113 nucleotidesECD_02909 and ECD_02910 are separated by 5 nucleotides ECD_02907: ECD_02907 - transport channel, at 3,045,552 to 3,047,033 _02907 ECD_02908: ECD_02908 - hypothetical protein, at 3,047,033 to 3,047,293 _02908 ECD_02909: ECD_02909 - DUF1190 family protein, at 3,047,181 to 3,047,852 _02909 ECD_02910: ECD_02910 - ATP-Grasp family ATPase, at 3,047,858 to 3,049,018 _02910 Position (kb) 3047 3048Strain fitness (log2 ratio) -1 0 1 2at 3046.098 kb on + strand, within ECD_02907at 3046.133 kb on + strand, within ECD_02907at 3046.133 kb on + strand, within ECD_02907at 3046.133 kb on + strand, within ECD_02907at 3046.182 kb on + strand, within ECD_02907at 3046.182 kb on + strand, within ECD_02907at 3046.288 kb on + strand, within ECD_02907at 3046.366 kb on + strand, within ECD_02907at 3046.399 kb on - strand, within ECD_02907at 3046.628 kb on + strand, within ECD_02907at 3046.628 kb on + strand, within ECD_02907at 3046.647 kb on + strand, within ECD_02907at 3046.718 kb on + strand, within ECD_02907at 3046.934 kb on + strandat 3046.934 kb on + strandat 3046.934 kb on + strandat 3047.068 kb on - strand, within ECD_02908at 3047.068 kb on - strand, within ECD_02908at 3047.090 kb on + strand, within ECD_02908at 3047.090 kb on + strand, within ECD_02908at 3047.091 kb on - strand, within ECD_02908at 3047.141 kb on + strand, within ECD_02908at 3047.153 kb on + strand, within ECD_02908at 3047.154 kb on - strand, within ECD_02908at 3047.157 kb on + strand, within ECD_02908at 3047.157 kb on + strand, within ECD_02908at 3047.157 kb on + strand, within ECD_02908at 3047.158 kb on - strand, within ECD_02908at 3047.158 kb on - strand, within ECD_02908at 3047.372 kb on + strand, within ECD_02909at 3047.373 kb on - strand, within ECD_02909at 3047.424 kb on + strand, within ECD_02909at 3047.658 kb on + strand, within ECD_02909at 3047.660 kb on + strand, within ECD_02909at 3047.682 kb on + strand, within ECD_02909at 3047.804 kb on + strandat 3047.804 kb on + strandat 3047.805 kb on - strandat 3047.872 kb on + strandat 3047.967 kb on - strandat 3047.969 kb on + strandat 3047.969 kb on + strandat 3048.149 kb on + strand, within ECD_02910at 3048.230 kb on + strand, within ECD_02910

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,046,098 + ECD_02907 0.37 -0.8
3,046,133 + ECD_02907 0.39 -0.8
3,046,133 + ECD_02907 0.39 -0.6
3,046,133 + ECD_02907 0.39 -0.2
3,046,182 + ECD_02907 0.43 -0.3
3,046,182 + ECD_02907 0.43 -0.7
3,046,288 + ECD_02907 0.50 +2.7
3,046,366 + ECD_02907 0.55 -0.2
3,046,399 - ECD_02907 0.57 -1.5
3,046,628 + ECD_02907 0.73 -1.2
3,046,628 + ECD_02907 0.73 -1.6
3,046,647 + ECD_02907 0.74 -0.9
3,046,718 + ECD_02907 0.79 +0.4
3,046,934 + +0.8
3,046,934 + +1.0
3,046,934 + +0.3
3,047,068 - ECD_02908 0.13 -1.4
3,047,068 - ECD_02908 0.13 +1.0
3,047,090 + ECD_02908 0.22 +0.5
3,047,090 + ECD_02908 0.22 +0.6
3,047,091 - ECD_02908 0.22 +0.8
3,047,141 + ECD_02908 0.41 +0.4
3,047,153 + ECD_02908 0.46 -0.3
3,047,154 - ECD_02908 0.46 +0.3
3,047,157 + ECD_02908 0.48 +0.1
3,047,157 + ECD_02908 0.48 +0.6
3,047,157 + ECD_02908 0.48 +0.5
3,047,158 - ECD_02908 0.48 +1.1
3,047,158 - ECD_02908 0.48 +0.1
3,047,372 + ECD_02909 0.28 +0.5
3,047,373 - ECD_02909 0.29 -0.2
3,047,424 + ECD_02909 0.36 +0.8
3,047,658 + ECD_02909 0.71 -0.9
3,047,660 + ECD_02909 0.71 -1.2
3,047,682 + ECD_02909 0.75 +1.1
3,047,804 + +1.8
3,047,804 + -0.3
3,047,805 - +0.5
3,047,872 + -0.3
3,047,967 - -0.1
3,047,969 + -0.1
3,047,969 + +0.9
3,048,149 + ECD_02910 0.25 -0.2
3,048,230 + ECD_02910 0.32 +0.8

Or see this region's nucleotide sequence