Strain Fitness in Escherichia coli BL21 around ECD_02870

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02867 and ECD_02868 overlap by 8 nucleotidesECD_02868 and ECD_02869 overlap by 8 nucleotidesECD_02869 and ECD_02870 overlap by 1 nucleotidesECD_02870 and ECD_02871 overlap by 4 nucleotides ECD_02867: ECD_02867 - protein involved with the maturation of hydrogenases 1 and 2, at 3,007,411 to 3,007,752 _02867 ECD_02868: ECD_02868 - hydrogenase 2-specific chaperone, at 3,007,745 to 3,008,233 _02868 ECD_02869: ECD_02869 - maturation protease for hydrogenase 2, at 3,008,226 to 3,008,720 _02869 ECD_02870: ECD_02870 - hydrogenase 2, large subunit, at 3,008,720 to 3,010,423 _02870 ECD_02871: ECD_02871 - putative hydrogenase 2 cytochrome b type component, at 3,010,420 to 3,011,598 _02871 Position (kb) 3008 3009 3010 3011Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3007.802 kb on + strand, within ECD_02868at 3007.802 kb on + strand, within ECD_02868at 3007.803 kb on - strand, within ECD_02868at 3007.803 kb on - strand, within ECD_02868at 3007.921 kb on - strand, within ECD_02868at 3007.960 kb on + strand, within ECD_02868at 3007.969 kb on - strand, within ECD_02868at 3007.969 kb on - strand, within ECD_02868at 3008.112 kb on + strand, within ECD_02868at 3008.112 kb on + strand, within ECD_02868at 3008.113 kb on - strand, within ECD_02868at 3008.113 kb on - strand, within ECD_02868at 3008.187 kb on - strandat 3008.220 kb on - strandat 3008.543 kb on + strand, within ECD_02869at 3008.632 kb on + strand, within ECD_02869at 3008.633 kb on - strand, within ECD_02869at 3008.633 kb on - strand, within ECD_02869at 3008.714 kb on + strandat 3008.715 kb on - strandat 3008.721 kb on + strandat 3008.765 kb on + strandat 3008.766 kb on - strandat 3008.766 kb on - strandat 3008.766 kb on - strandat 3008.810 kb on - strandat 3008.872 kb on - strandat 3008.938 kb on - strand, within ECD_02870at 3009.149 kb on - strand, within ECD_02870at 3009.149 kb on - strand, within ECD_02870at 3009.164 kb on - strand, within ECD_02870at 3009.194 kb on - strand, within ECD_02870at 3009.278 kb on - strand, within ECD_02870at 3009.278 kb on - strand, within ECD_02870at 3009.278 kb on - strand, within ECD_02870at 3009.278 kb on - strand, within ECD_02870at 3009.281 kb on - strand, within ECD_02870at 3009.339 kb on + strand, within ECD_02870at 3009.340 kb on - strand, within ECD_02870at 3009.366 kb on + strand, within ECD_02870at 3009.367 kb on - strand, within ECD_02870at 3009.417 kb on + strand, within ECD_02870at 3009.417 kb on + strand, within ECD_02870at 3009.418 kb on - strand, within ECD_02870at 3009.460 kb on - strand, within ECD_02870at 3009.490 kb on - strand, within ECD_02870at 3009.580 kb on - strand, within ECD_02870at 3009.580 kb on - strand, within ECD_02870at 3009.632 kb on - strand, within ECD_02870at 3009.632 kb on - strand, within ECD_02870at 3009.650 kb on - strand, within ECD_02870at 3009.650 kb on - strand, within ECD_02870at 3009.650 kb on - strand, within ECD_02870at 3009.650 kb on - strand, within ECD_02870at 3009.650 kb on - strand, within ECD_02870at 3009.651 kb on + strand, within ECD_02870at 3009.651 kb on + strand, within ECD_02870at 3009.651 kb on + strand, within ECD_02870at 3009.652 kb on - strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.699 kb on + strand, within ECD_02870at 3009.700 kb on - strand, within ECD_02870at 3009.700 kb on - strand, within ECD_02870at 3009.764 kb on + strand, within ECD_02870at 3009.852 kb on + strand, within ECD_02870at 3009.852 kb on + strand, within ECD_02870at 3009.853 kb on - strand, within ECD_02870at 3009.853 kb on - strand, within ECD_02870at 3010.112 kb on - strand, within ECD_02870at 3010.112 kb on - strand, within ECD_02870at 3010.112 kb on - strand, within ECD_02870at 3010.155 kb on + strand, within ECD_02870at 3010.155 kb on + strand, within ECD_02870at 3010.156 kb on - strand, within ECD_02870at 3010.156 kb on - strand, within ECD_02870at 3010.229 kb on - strand, within ECD_02870at 3010.231 kb on + strand, within ECD_02870at 3010.231 kb on + strand, within ECD_02870at 3010.231 kb on + strand, within ECD_02870at 3010.231 kb on + strand, within ECD_02870at 3010.232 kb on - strand, within ECD_02870at 3010.232 kb on - strand, within ECD_02870at 3010.235 kb on + strand, within ECD_02870at 3010.235 kb on + strand, within ECD_02870at 3010.235 kb on + strand, within ECD_02870at 3010.236 kb on - strand, within ECD_02870at 3010.236 kb on - strand, within ECD_02870at 3010.236 kb on - strand, within ECD_02870at 3010.246 kb on + strand, within ECD_02870at 3010.246 kb on + strand, within ECD_02870at 3010.246 kb on + strand, within ECD_02870at 3010.246 kb on + strand, within ECD_02870at 3010.247 kb on - strand, within ECD_02870at 3010.247 kb on - strand, within ECD_02870at 3010.374 kb on - strandat 3010.374 kb on - strandat 3010.374 kb on - strandat 3010.405 kb on + strandat 3010.406 kb on - strandat 3010.408 kb on + strandat 3010.408 kb on + strandat 3010.409 kb on - strandat 3010.447 kb on - strandat 3010.463 kb on - strandat 3010.495 kb on + strandat 3010.496 kb on - strandat 3010.503 kb on - strandat 3010.533 kb on + strandat 3010.604 kb on + strand, within ECD_02871at 3010.604 kb on + strand, within ECD_02871at 3010.605 kb on - strand, within ECD_02871at 3010.630 kb on + strand, within ECD_02871at 3010.748 kb on + strand, within ECD_02871at 3010.748 kb on + strand, within ECD_02871at 3010.748 kb on + strand, within ECD_02871at 3010.749 kb on - strand, within ECD_02871at 3010.787 kb on + strand, within ECD_02871at 3010.791 kb on + strand, within ECD_02871at 3010.792 kb on - strand, within ECD_02871at 3010.792 kb on - strand, within ECD_02871at 3010.792 kb on - strand, within ECD_02871at 3010.792 kb on - strand, within ECD_02871at 3010.855 kb on - strand, within ECD_02871at 3010.855 kb on - strand, within ECD_02871at 3011.102 kb on - strand, within ECD_02871at 3011.176 kb on - strand, within ECD_02871at 3011.177 kb on + strand, within ECD_02871at 3011.177 kb on + strand, within ECD_02871at 3011.177 kb on + strand, within ECD_02871at 3011.177 kb on + strand, within ECD_02871at 3011.177 kb on + strand, within ECD_02871at 3011.177 kb on + strand, within ECD_02871at 3011.177 kb on + strand, within ECD_02871at 3011.178 kb on - strand, within ECD_02871at 3011.178 kb on - strand, within ECD_02871at 3011.178 kb on - strand, within ECD_02871at 3011.178 kb on - strand, within ECD_02871at 3011.178 kb on - strand, within ECD_02871at 3011.178 kb on - strand, within ECD_02871at 3011.178 kb on - strand, within ECD_02871at 3011.178 kb on - strand, within ECD_02871at 3011.178 kb on - strand, within ECD_02871at 3011.178 kb on - strand, within ECD_02871at 3011.178 kb on - strand, within ECD_02871at 3011.178 kb on - strand, within ECD_02871at 3011.187 kb on + strand, within ECD_02871at 3011.240 kb on + strand, within ECD_02871at 3011.240 kb on + strand, within ECD_02871at 3011.241 kb on - strand, within ECD_02871at 3011.241 kb on - strand, within ECD_02871at 3011.241 kb on - strand, within ECD_02871at 3011.246 kb on + strand, within ECD_02871at 3011.247 kb on - strand, within ECD_02871at 3011.247 kb on - strand, within ECD_02871at 3011.303 kb on + strand, within ECD_02871at 3011.369 kb on + strand, within ECD_02871at 3011.369 kb on + strand, within ECD_02871at 3011.370 kb on - strand, within ECD_02871at 3011.372 kb on - strand, within ECD_02871

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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3,007,802 + ECD_02868 0.12 +0.1
3,007,802 + ECD_02868 0.12 +0.1
3,007,803 - ECD_02868 0.12 +0.1
3,007,803 - ECD_02868 0.12 -0.5
3,007,921 - ECD_02868 0.36 +0.8
3,007,960 + ECD_02868 0.44 +2.4
3,007,969 - ECD_02868 0.46 -0.2
3,007,969 - ECD_02868 0.46 -0.0
3,008,112 + ECD_02868 0.75 -0.1
3,008,112 + ECD_02868 0.75 +0.7
3,008,113 - ECD_02868 0.75 -0.6
3,008,113 - ECD_02868 0.75 -0.2
3,008,187 - -0.8
3,008,220 - -2.9
3,008,543 + ECD_02869 0.64 +0.5
3,008,632 + ECD_02869 0.82 +1.1
3,008,633 - ECD_02869 0.82 +0.4
3,008,633 - ECD_02869 0.82 -0.1
3,008,714 + -0.3
3,008,715 - -0.1
3,008,721 + -0.8
3,008,765 + +0.6
3,008,766 - +0.8
3,008,766 - +0.1
3,008,766 - +0.8
3,008,810 - -1.3
3,008,872 - -0.8
3,008,938 - ECD_02870 0.13 -0.8
3,009,149 - ECD_02870 0.25 +0.8
3,009,149 - ECD_02870 0.25 -1.0
3,009,164 - ECD_02870 0.26 +0.6
3,009,194 - ECD_02870 0.28 +0.2
3,009,278 - ECD_02870 0.33 +0.5
3,009,278 - ECD_02870 0.33 -0.2
3,009,278 - ECD_02870 0.33 -1.9
3,009,278 - ECD_02870 0.33 +0.3
3,009,281 - ECD_02870 0.33 +0.8
3,009,339 + ECD_02870 0.36 -0.5
3,009,340 - ECD_02870 0.36 -1.2
3,009,366 + ECD_02870 0.38 +0.1
3,009,367 - ECD_02870 0.38 -0.2
3,009,417 + ECD_02870 0.41 +1.1
3,009,417 + ECD_02870 0.41 +0.7
3,009,418 - ECD_02870 0.41 -0.9
3,009,460 - ECD_02870 0.43 +0.2
3,009,490 - ECD_02870 0.45 -1.1
3,009,580 - ECD_02870 0.50 -0.2
3,009,580 - ECD_02870 0.50 -1.2
3,009,632 - ECD_02870 0.54 -0.6
3,009,632 - ECD_02870 0.54 +0.3
3,009,650 - ECD_02870 0.55 -1.2
3,009,650 - ECD_02870 0.55 +1.3
3,009,650 - ECD_02870 0.55 +0.3
3,009,650 - ECD_02870 0.55 +0.5
3,009,650 - ECD_02870 0.55 -0.3
3,009,651 + ECD_02870 0.55 -0.5
3,009,651 + ECD_02870 0.55 +0.2
3,009,651 + ECD_02870 0.55 +0.1
3,009,652 - ECD_02870 0.55 -1.2
3,009,699 + ECD_02870 0.57 +0.4
3,009,699 + ECD_02870 0.57 -0.6
3,009,699 + ECD_02870 0.57 -0.3
3,009,699 + ECD_02870 0.57 -0.3
3,009,699 + ECD_02870 0.57 +0.5
3,009,699 + ECD_02870 0.57 +0.5
3,009,699 + ECD_02870 0.57 -1.6
3,009,700 - ECD_02870 0.58 +1.4
3,009,700 - ECD_02870 0.58 -0.1
3,009,764 + ECD_02870 0.61 +0.2
3,009,852 + ECD_02870 0.66 -1.0
3,009,852 + ECD_02870 0.66 -0.6
3,009,853 - ECD_02870 0.66 -0.1
3,009,853 - ECD_02870 0.66 +2.1
3,010,112 - ECD_02870 0.82 -2.0
3,010,112 - ECD_02870 0.82 +0.5
3,010,112 - ECD_02870 0.82 +0.1
3,010,155 + ECD_02870 0.84 -0.7
3,010,155 + ECD_02870 0.84 +0.7
3,010,156 - ECD_02870 0.84 +0.0
3,010,156 - ECD_02870 0.84 +0.1
3,010,229 - ECD_02870 0.89 -1.3
3,010,231 + ECD_02870 0.89 -1.1
3,010,231 + ECD_02870 0.89 -0.2
3,010,231 + ECD_02870 0.89 +0.0
3,010,231 + ECD_02870 0.89 -2.2
3,010,232 - ECD_02870 0.89 +0.2
3,010,232 - ECD_02870 0.89 +0.5
3,010,235 + ECD_02870 0.89 +1.2
3,010,235 + ECD_02870 0.89 +0.1
3,010,235 + ECD_02870 0.89 +0.8
3,010,236 - ECD_02870 0.89 +0.3
3,010,236 - ECD_02870 0.89 +0.4
3,010,236 - ECD_02870 0.89 -0.1
3,010,246 + ECD_02870 0.90 +0.7
3,010,246 + ECD_02870 0.90 +1.5
3,010,246 + ECD_02870 0.90 +0.9
3,010,246 + ECD_02870 0.90 +0.2
3,010,247 - ECD_02870 0.90 +0.3
3,010,247 - ECD_02870 0.90 -0.1
3,010,374 - +0.4
3,010,374 - +0.4
3,010,374 - -0.1
3,010,405 + +0.8
3,010,406 - +0.1
3,010,408 + +0.6
3,010,408 + +0.8
3,010,409 - +0.1
3,010,447 - -0.2
3,010,463 - +0.5
3,010,495 + -0.5
3,010,496 - +0.1
3,010,503 - -0.8
3,010,533 + +0.4
3,010,604 + ECD_02871 0.16 -0.2
3,010,604 + ECD_02871 0.16 -0.9
3,010,605 - ECD_02871 0.16 +0.2
3,010,630 + ECD_02871 0.18 +1.9
3,010,748 + ECD_02871 0.28 -1.2
3,010,748 + ECD_02871 0.28 +0.4
3,010,748 + ECD_02871 0.28 -0.6
3,010,749 - ECD_02871 0.28 -0.4
3,010,787 + ECD_02871 0.31 -0.1
3,010,791 + ECD_02871 0.31 -1.0
3,010,792 - ECD_02871 0.32 -0.3
3,010,792 - ECD_02871 0.32 -1.2
3,010,792 - ECD_02871 0.32 -0.2
3,010,792 - ECD_02871 0.32 -1.1
3,010,855 - ECD_02871 0.37 -0.8
3,010,855 - ECD_02871 0.37 +0.1
3,011,102 - ECD_02871 0.58 +1.7
3,011,176 - ECD_02871 0.64 -0.4
3,011,177 + ECD_02871 0.64 +0.2
3,011,177 + ECD_02871 0.64 +0.1
3,011,177 + ECD_02871 0.64 +1.2
3,011,177 + ECD_02871 0.64 +0.4
3,011,177 + ECD_02871 0.64 +0.1
3,011,177 + ECD_02871 0.64 -1.2
3,011,177 + ECD_02871 0.64 +0.6
3,011,178 - ECD_02871 0.64 -1.9
3,011,178 - ECD_02871 0.64 +0.6
3,011,178 - ECD_02871 0.64 +0.2
3,011,178 - ECD_02871 0.64 -0.1
3,011,178 - ECD_02871 0.64 +0.4
3,011,178 - ECD_02871 0.64 -0.8
3,011,178 - ECD_02871 0.64 +0.2
3,011,178 - ECD_02871 0.64 -0.4
3,011,178 - ECD_02871 0.64 -2.4
3,011,178 - ECD_02871 0.64 +0.3
3,011,178 - ECD_02871 0.64 -0.9
3,011,178 - ECD_02871 0.64 +0.4
3,011,187 + ECD_02871 0.65 +0.5
3,011,240 + ECD_02871 0.70 -1.2
3,011,240 + ECD_02871 0.70 +0.7
3,011,241 - ECD_02871 0.70 +1.1
3,011,241 - ECD_02871 0.70 +0.4
3,011,241 - ECD_02871 0.70 +0.8
3,011,246 + ECD_02871 0.70 +0.7
3,011,247 - ECD_02871 0.70 +0.7
3,011,247 - ECD_02871 0.70 -0.9
3,011,303 + ECD_02871 0.75 -1.5
3,011,369 + ECD_02871 0.80 +0.4
3,011,369 + ECD_02871 0.80 +0.3
3,011,370 - ECD_02871 0.81 +0.2
3,011,372 - ECD_02871 0.81 +0.1

Or see this region's nucleotide sequence