Strain Fitness in Escherichia coli BL21 around ECD_02834

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02832 and ECD_02833 are separated by 38 nucleotidesECD_02833 and ECD_02834 overlap by 4 nucleotidesECD_02834 and ECD_02835 are separated by 3 nucleotidesECD_02835 and ECD_02836 are separated by 16 nucleotides ECD_02832: ECD_02832 - putative type II secretion protein GspJ, at 2,965,556 to 2,966,119 _02832 ECD_02833: ECD_02833 - putative type II secretion protein GspI, at 2,966,158 to 2,966,529 _02833 ECD_02834: ECD_02834 - putative type II secretion protein GspH, at 2,966,526 to 2,967,089 _02834 ECD_02835: ECD_02835 - putative type II secretion protein GspG, at 2,967,093 to 2,967,548 _02835 ECD_02836: ECD_02836 - putative type II secretion protein GspF, at 2,967,565 to 2,968,788 _02836 Position (kb) 2966 2967 2968Strain fitness (log2 ratio) -1 0 1at 2965.562 kb on + strandat 2965.563 kb on - strandat 2965.690 kb on - strand, within ECD_02832at 2966.295 kb on - strand, within ECD_02833at 2966.363 kb on + strand, within ECD_02833at 2966.364 kb on - strand, within ECD_02833at 2966.364 kb on - strand, within ECD_02833at 2966.614 kb on + strand, within ECD_02834at 2966.750 kb on - strand, within ECD_02834at 2966.750 kb on - strand, within ECD_02834at 2966.810 kb on + strand, within ECD_02834at 2966.898 kb on + strand, within ECD_02834at 2966.898 kb on + strand, within ECD_02834at 2967.119 kb on + strandat 2967.174 kb on - strand, within ECD_02835at 2967.176 kb on - strand, within ECD_02835at 2967.211 kb on + strand, within ECD_02835at 2967.217 kb on + strand, within ECD_02835at 2967.218 kb on - strand, within ECD_02835at 2967.251 kb on + strand, within ECD_02835at 2967.252 kb on - strand, within ECD_02835at 2967.256 kb on + strand, within ECD_02835at 2967.272 kb on - strand, within ECD_02835at 2967.272 kb on - strand, within ECD_02835at 2967.290 kb on + strand, within ECD_02835at 2967.290 kb on + strand, within ECD_02835at 2967.361 kb on + strand, within ECD_02835at 2967.361 kb on + strand, within ECD_02835at 2967.477 kb on - strand, within ECD_02835at 2967.567 kb on - strandat 2967.580 kb on - strandat 2967.580 kb on - strandat 2967.621 kb on + strandat 2967.776 kb on + strand, within ECD_02836at 2967.776 kb on + strand, within ECD_02836at 2967.776 kb on + strand, within ECD_02836at 2967.777 kb on - strand, within ECD_02836at 2967.879 kb on - strand, within ECD_02836at 2967.952 kb on + strand, within ECD_02836at 2967.953 kb on - strand, within ECD_02836

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,965,562 + +0.5
2,965,563 - -0.2
2,965,690 - ECD_02832 0.24 +1.4
2,966,295 - ECD_02833 0.37 +1.0
2,966,363 + ECD_02833 0.55 -0.1
2,966,364 - ECD_02833 0.55 +0.5
2,966,364 - ECD_02833 0.55 +0.5
2,966,614 + ECD_02834 0.16 +1.4
2,966,750 - ECD_02834 0.40 +0.3
2,966,750 - ECD_02834 0.40 +0.3
2,966,810 + ECD_02834 0.50 -0.5
2,966,898 + ECD_02834 0.66 +0.8
2,966,898 + ECD_02834 0.66 +0.9
2,967,119 + +0.4
2,967,174 - ECD_02835 0.18 +0.5
2,967,176 - ECD_02835 0.18 +0.8
2,967,211 + ECD_02835 0.26 +0.2
2,967,217 + ECD_02835 0.27 +0.5
2,967,218 - ECD_02835 0.27 +0.5
2,967,251 + ECD_02835 0.35 +0.1
2,967,252 - ECD_02835 0.35 +0.5
2,967,256 + ECD_02835 0.36 +0.4
2,967,272 - ECD_02835 0.39 +0.5
2,967,272 - ECD_02835 0.39 +0.6
2,967,290 + ECD_02835 0.43 +0.5
2,967,290 + ECD_02835 0.43 +0.3
2,967,361 + ECD_02835 0.59 +0.5
2,967,361 + ECD_02835 0.59 +0.5
2,967,477 - ECD_02835 0.84 +0.6
2,967,567 - -0.5
2,967,580 - +0.5
2,967,580 - +0.7
2,967,621 + +0.2
2,967,776 + ECD_02836 0.17 +0.5
2,967,776 + ECD_02836 0.17 +0.3
2,967,776 + ECD_02836 0.17 +0.6
2,967,777 - ECD_02836 0.17 +0.7
2,967,879 - ECD_02836 0.26 +0.4
2,967,952 + ECD_02836 0.32 +0.4
2,967,953 - ECD_02836 0.32 -0.5

Or see this region's nucleotide sequence