Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02832 and ECD_02833 are separated by 38 nucleotides ECD_02833 and ECD_02834 overlap by 4 nucleotides ECD_02834 and ECD_02835 are separated by 3 nucleotides ECD_02835 and ECD_02836 are separated by 16 nucleotides
ECD_02832: ECD_02832 - putative type II secretion protein GspJ, at 2,965,556 to 2,966,119
_02832
ECD_02833: ECD_02833 - putative type II secretion protein GspI, at 2,966,158 to 2,966,529
_02833
ECD_02834: ECD_02834 - putative type II secretion protein GspH, at 2,966,526 to 2,967,089
_02834
ECD_02835: ECD_02835 - putative type II secretion protein GspG, at 2,967,093 to 2,967,548
_02835
ECD_02836: ECD_02836 - putative type II secretion protein GspF, at 2,967,565 to 2,968,788
_02836
Position (kb)
2966
2967
2968 Strain fitness (log2 ratio)
-1
0
1 at 2965.562 kb on + strand at 2965.563 kb on - strand at 2965.690 kb on - strand, within ECD_02832 at 2966.295 kb on - strand, within ECD_02833 at 2966.363 kb on + strand, within ECD_02833 at 2966.364 kb on - strand, within ECD_02833 at 2966.364 kb on - strand, within ECD_02833 at 2966.614 kb on + strand, within ECD_02834 at 2966.750 kb on - strand, within ECD_02834 at 2966.750 kb on - strand, within ECD_02834 at 2966.810 kb on + strand, within ECD_02834 at 2966.898 kb on + strand, within ECD_02834 at 2966.898 kb on + strand, within ECD_02834 at 2967.119 kb on + strand at 2967.174 kb on - strand, within ECD_02835 at 2967.176 kb on - strand, within ECD_02835 at 2967.211 kb on + strand, within ECD_02835 at 2967.217 kb on + strand, within ECD_02835 at 2967.218 kb on - strand, within ECD_02835 at 2967.251 kb on + strand, within ECD_02835 at 2967.252 kb on - strand, within ECD_02835 at 2967.256 kb on + strand, within ECD_02835 at 2967.272 kb on - strand, within ECD_02835 at 2967.272 kb on - strand, within ECD_02835 at 2967.290 kb on + strand, within ECD_02835 at 2967.290 kb on + strand, within ECD_02835 at 2967.361 kb on + strand, within ECD_02835 at 2967.361 kb on + strand, within ECD_02835 at 2967.477 kb on - strand, within ECD_02835 at 2967.567 kb on - strand at 2967.580 kb on - strand at 2967.580 kb on - strand at 2967.621 kb on + strand at 2967.776 kb on + strand, within ECD_02836 at 2967.776 kb on + strand, within ECD_02836 at 2967.776 kb on + strand, within ECD_02836 at 2967.777 kb on - strand, within ECD_02836 at 2967.879 kb on - strand, within ECD_02836 at 2967.952 kb on + strand, within ECD_02836 at 2967.953 kb on - strand, within ECD_02836
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,965,562 + +0.5 2,965,563 - -0.2 2,965,690 - ECD_02832 0.24 +1.4 2,966,295 - ECD_02833 0.37 +1.0 2,966,363 + ECD_02833 0.55 -0.1 2,966,364 - ECD_02833 0.55 +0.5 2,966,364 - ECD_02833 0.55 +0.5 2,966,614 + ECD_02834 0.16 +1.4 2,966,750 - ECD_02834 0.40 +0.3 2,966,750 - ECD_02834 0.40 +0.3 2,966,810 + ECD_02834 0.50 -0.5 2,966,898 + ECD_02834 0.66 +0.8 2,966,898 + ECD_02834 0.66 +0.9 2,967,119 + +0.4 2,967,174 - ECD_02835 0.18 +0.5 2,967,176 - ECD_02835 0.18 +0.8 2,967,211 + ECD_02835 0.26 +0.2 2,967,217 + ECD_02835 0.27 +0.5 2,967,218 - ECD_02835 0.27 +0.5 2,967,251 + ECD_02835 0.35 +0.1 2,967,252 - ECD_02835 0.35 +0.5 2,967,256 + ECD_02835 0.36 +0.4 2,967,272 - ECD_02835 0.39 +0.5 2,967,272 - ECD_02835 0.39 +0.6 2,967,290 + ECD_02835 0.43 +0.5 2,967,290 + ECD_02835 0.43 +0.3 2,967,361 + ECD_02835 0.59 +0.5 2,967,361 + ECD_02835 0.59 +0.5 2,967,477 - ECD_02835 0.84 +0.6 2,967,567 - -0.5 2,967,580 - +0.5 2,967,580 - +0.7 2,967,621 + +0.2 2,967,776 + ECD_02836 0.17 +0.5 2,967,776 + ECD_02836 0.17 +0.3 2,967,776 + ECD_02836 0.17 +0.6 2,967,777 - ECD_02836 0.17 +0.7 2,967,879 - ECD_02836 0.26 +0.4 2,967,952 + ECD_02836 0.32 +0.4 2,967,953 - ECD_02836 0.32 -0.5
Or see this region's nucleotide sequence