Strain Fitness in Escherichia coli BL21 around ECD_02671

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02670 and ECD_02671 are separated by 12 nucleotidesECD_02671 and ECD_02672 overlap by 16 nucleotidesECD_02672 and ECD_02673 overlap by 4 nucleotidesECD_02673 and ECD_02674 overlap by 10 nucleotides ECD_02670: ECD_02670 - exonuclease V (RecBCD complex), gamma chain, at 2,797,340 to 2,800,708 _02670 ECD_02671: ECD_02671 - putative prepilin peptidase-dependent protein, at 2,800,721 to 2,801,044 _02671 ECD_02672: ECD_02672 - DUF2509 family protein, at 2,801,029 to 2,801,436 _02672 ECD_02673: ECD_02673 - putative prepilin peptidase-dependent protein, at 2,801,433 to 2,801,996 _02673 ECD_02674: ECD_02674 - putative prepilin peptidase-dependent protein, at 2,801,987 to 2,802,457 _02674 Position (kb) 2800 2801 2802Strain fitness (log2 ratio) -2 -1 0 1at 2799.848 kb on - strand, within ECD_02670at 2799.882 kb on - strand, within ECD_02670at 2799.956 kb on - strand, within ECD_02670at 2800.703 kb on + strandat 2800.709 kb on - strandat 2800.709 kb on - strandat 2800.709 kb on - strandat 2800.781 kb on + strand, within ECD_02671at 2800.787 kb on - strand, within ECD_02671at 2800.787 kb on - strand, within ECD_02671at 2800.905 kb on + strand, within ECD_02671at 2800.934 kb on + strand, within ECD_02671at 2800.998 kb on - strand, within ECD_02671at 2800.998 kb on - strand, within ECD_02671at 2801.012 kb on - strandat 2801.044 kb on + strandat 2801.044 kb on + strandat 2801.045 kb on - strandat 2801.045 kb on - strandat 2801.045 kb on - strandat 2801.045 kb on - strandat 2801.162 kb on - strand, within ECD_02672at 2801.162 kb on - strand, within ECD_02672at 2801.172 kb on + strand, within ECD_02672at 2801.173 kb on - strand, within ECD_02672at 2801.173 kb on - strand, within ECD_02672at 2801.173 kb on - strand, within ECD_02672at 2801.182 kb on + strand, within ECD_02672at 2801.217 kb on - strand, within ECD_02672at 2801.217 kb on - strand, within ECD_02672at 2801.366 kb on - strand, within ECD_02672at 2801.366 kb on - strand, within ECD_02672at 2801.368 kb on + strand, within ECD_02672at 2801.368 kb on + strand, within ECD_02672at 2801.456 kb on + strandat 2801.456 kb on + strandat 2801.456 kb on + strandat 2801.458 kb on + strandat 2801.458 kb on + strandat 2801.458 kb on + strandat 2801.458 kb on + strandat 2801.459 kb on - strandat 2801.459 kb on - strandat 2801.459 kb on - strandat 2801.459 kb on - strandat 2801.459 kb on - strandat 2801.493 kb on - strand, within ECD_02673at 2801.493 kb on - strand, within ECD_02673at 2801.493 kb on - strand, within ECD_02673at 2801.507 kb on + strand, within ECD_02673at 2801.508 kb on - strand, within ECD_02673at 2801.508 kb on - strand, within ECD_02673at 2801.508 kb on - strand, within ECD_02673at 2801.508 kb on - strand, within ECD_02673at 2801.508 kb on - strand, within ECD_02673at 2801.508 kb on - strand, within ECD_02673at 2801.508 kb on - strand, within ECD_02673at 2801.550 kb on + strand, within ECD_02673at 2801.551 kb on - strand, within ECD_02673at 2801.551 kb on - strand, within ECD_02673at 2801.551 kb on - strand, within ECD_02673at 2801.551 kb on - strand, within ECD_02673at 2801.709 kb on - strand, within ECD_02673at 2801.742 kb on - strand, within ECD_02673at 2801.742 kb on - strand, within ECD_02673at 2801.742 kb on - strand, within ECD_02673at 2801.742 kb on - strand, within ECD_02673at 2801.828 kb on + strand, within ECD_02673at 2801.867 kb on + strand, within ECD_02673at 2801.932 kb on - strand, within ECD_02673at 2801.932 kb on - strand, within ECD_02673at 2801.932 kb on - strand, within ECD_02673at 2801.932 kb on - strand, within ECD_02673at 2801.932 kb on - strand, within ECD_02673at 2801.932 kb on - strand, within ECD_02673

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,799,848 - ECD_02670 0.74 +1.2
2,799,882 - ECD_02670 0.75 +0.8
2,799,956 - ECD_02670 0.78 +0.2
2,800,703 + +1.4
2,800,709 - -0.6
2,800,709 - +0.9
2,800,709 - +0.4
2,800,781 + ECD_02671 0.19 +0.4
2,800,787 - ECD_02671 0.20 +0.1
2,800,787 - ECD_02671 0.20 +1.1
2,800,905 + ECD_02671 0.57 -0.8
2,800,934 + ECD_02671 0.66 +1.6
2,800,998 - ECD_02671 0.85 +0.6
2,800,998 - ECD_02671 0.85 +0.4
2,801,012 - +0.6
2,801,044 + +0.5
2,801,044 + +0.4
2,801,045 - -0.1
2,801,045 - +0.3
2,801,045 - +0.0
2,801,045 - +0.9
2,801,162 - ECD_02672 0.33 +0.3
2,801,162 - ECD_02672 0.33 +0.3
2,801,172 + ECD_02672 0.35 -0.8
2,801,173 - ECD_02672 0.35 -0.4
2,801,173 - ECD_02672 0.35 -0.2
2,801,173 - ECD_02672 0.35 +0.3
2,801,182 + ECD_02672 0.38 +1.0
2,801,217 - ECD_02672 0.46 -0.1
2,801,217 - ECD_02672 0.46 +0.4
2,801,366 - ECD_02672 0.83 -0.6
2,801,366 - ECD_02672 0.83 +0.0
2,801,368 + ECD_02672 0.83 +0.8
2,801,368 + ECD_02672 0.83 +0.4
2,801,456 + -0.4
2,801,456 + +0.8
2,801,456 + -2.3
2,801,458 + -1.4
2,801,458 + -0.8
2,801,458 + +1.1
2,801,458 + -0.6
2,801,459 - -0.5
2,801,459 - -0.2
2,801,459 - +1.7
2,801,459 - +0.2
2,801,459 - -0.0
2,801,493 - ECD_02673 0.11 +0.5
2,801,493 - ECD_02673 0.11 -0.8
2,801,493 - ECD_02673 0.11 +0.0
2,801,507 + ECD_02673 0.13 +0.5
2,801,508 - ECD_02673 0.13 +0.3
2,801,508 - ECD_02673 0.13 +0.2
2,801,508 - ECD_02673 0.13 -0.2
2,801,508 - ECD_02673 0.13 +0.9
2,801,508 - ECD_02673 0.13 -1.0
2,801,508 - ECD_02673 0.13 +0.1
2,801,508 - ECD_02673 0.13 -0.6
2,801,550 + ECD_02673 0.21 +0.2
2,801,551 - ECD_02673 0.21 +1.1
2,801,551 - ECD_02673 0.21 -1.2
2,801,551 - ECD_02673 0.21 -0.0
2,801,551 - ECD_02673 0.21 -0.1
2,801,709 - ECD_02673 0.49 +0.5
2,801,742 - ECD_02673 0.55 +0.2
2,801,742 - ECD_02673 0.55 +0.5
2,801,742 - ECD_02673 0.55 +0.8
2,801,742 - ECD_02673 0.55 +1.2
2,801,828 + ECD_02673 0.70 -0.8
2,801,867 + ECD_02673 0.77 +0.4
2,801,932 - ECD_02673 0.88 +0.4
2,801,932 - ECD_02673 0.88 +0.4
2,801,932 - ECD_02673 0.88 +1.4
2,801,932 - ECD_02673 0.88 +0.6
2,801,932 - ECD_02673 0.88 -0.3
2,801,932 - ECD_02673 0.88 -1.1

Or see this region's nucleotide sequence