Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02669 and ECD_02670 are separated by 175 nucleotides ECD_02670 and ECD_02671 are separated by 12 nucleotides ECD_02671 and ECD_02672 overlap by 16 nucleotides ECD_02672 and ECD_02673 overlap by 4 nucleotides
ECD_02669: ECD_02669 - protease III, at 2,794,276 to 2,797,164
_02669
ECD_02670: ECD_02670 - exonuclease V (RecBCD complex), gamma chain, at 2,797,340 to 2,800,708
_02670
ECD_02671: ECD_02671 - putative prepilin peptidase-dependent protein, at 2,800,721 to 2,801,044
_02671
ECD_02672: ECD_02672 - DUF2509 family protein, at 2,801,029 to 2,801,436
_02672
ECD_02673: ECD_02673 - putative prepilin peptidase-dependent protein, at 2,801,433 to 2,801,996
_02673
Position (kb)
2797
2798
2799
2800
2801 Strain fitness (log2 ratio)
-2
-1
0
1 at 2796.450 kb on + strand, within ECD_02669 at 2796.451 kb on - strand, within ECD_02669 at 2796.451 kb on - strand, within ECD_02669 at 2796.453 kb on + strand, within ECD_02669 at 2796.458 kb on + strand, within ECD_02669 at 2796.459 kb on - strand, within ECD_02669 at 2796.463 kb on - strand, within ECD_02669 at 2796.489 kb on - strand, within ECD_02669 at 2796.492 kb on - strand, within ECD_02669 at 2796.492 kb on - strand, within ECD_02669 at 2796.531 kb on + strand, within ECD_02669 at 2796.548 kb on - strand, within ECD_02669 at 2796.643 kb on - strand, within ECD_02669 at 2796.656 kb on - strand, within ECD_02669 at 2796.676 kb on - strand, within ECD_02669 at 2796.693 kb on - strand, within ECD_02669 at 2796.693 kb on - strand, within ECD_02669 at 2796.720 kb on + strand, within ECD_02669 at 2796.720 kb on + strand, within ECD_02669 at 2796.720 kb on + strand, within ECD_02669 at 2796.720 kb on + strand, within ECD_02669 at 2796.721 kb on - strand, within ECD_02669 at 2796.721 kb on - strand, within ECD_02669 at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.888 kb on + strand at 2796.889 kb on - strand at 2796.889 kb on - strand at 2796.889 kb on - strand at 2796.889 kb on - strand at 2796.889 kb on - strand at 2796.889 kb on - strand at 2796.889 kb on - strand at 2796.889 kb on - strand at 2796.889 kb on - strand at 2796.889 kb on - strand at 2796.899 kb on + strand at 2796.899 kb on + strand at 2796.899 kb on + strand at 2796.900 kb on - strand at 2796.900 kb on - strand at 2796.900 kb on - strand at 2796.900 kb on - strand at 2796.900 kb on - strand at 2796.900 kb on - strand at 2796.917 kb on + strand at 2796.973 kb on - strand at 2796.973 kb on - strand at 2797.008 kb on + strand at 2797.024 kb on + strand at 2797.024 kb on + strand at 2797.024 kb on + strand at 2797.024 kb on + strand at 2797.025 kb on - strand at 2797.025 kb on - strand at 2797.025 kb on - strand at 2797.025 kb on - strand at 2797.025 kb on - strand at 2797.025 kb on - strand at 2797.025 kb on - strand at 2797.025 kb on - strand at 2797.025 kb on - strand at 2797.025 kb on - strand at 2797.025 kb on - strand at 2797.025 kb on - strand at 2797.027 kb on - strand at 2797.027 kb on - strand at 2797.027 kb on - strand at 2797.060 kb on - strand at 2797.106 kb on - strand at 2797.106 kb on - strand at 2797.135 kb on + strand at 2797.136 kb on - strand at 2797.262 kb on - strand at 2797.267 kb on + strand at 2797.267 kb on + strand at 2797.267 kb on + strand at 2797.267 kb on + strand at 2797.267 kb on + strand at 2797.267 kb on + strand at 2797.267 kb on + strand at 2797.268 kb on - strand at 2797.268 kb on - strand at 2797.268 kb on - strand at 2797.268 kb on - strand at 2797.268 kb on - strand at 2797.268 kb on - strand at 2797.268 kb on - strand at 2797.268 kb on - strand at 2797.268 kb on - strand at 2797.268 kb on - strand at 2797.268 kb on - strand at 2797.268 kb on - strand at 2797.269 kb on + strand at 2797.269 kb on + strand at 2797.269 kb on + strand at 2797.269 kb on + strand at 2797.269 kb on + strand at 2797.270 kb on - strand at 2797.270 kb on - strand at 2797.270 kb on - strand at 2797.270 kb on - strand at 2797.270 kb on - strand at 2797.271 kb on + strand at 2797.272 kb on - strand at 2797.301 kb on + strand at 2797.301 kb on + strand at 2797.302 kb on - strand at 2797.302 kb on - strand at 2797.302 kb on - strand at 2797.306 kb on + strand at 2797.332 kb on + strand at 2798.723 kb on - strand, within ECD_02670 at 2799.500 kb on - strand, within ECD_02670 at 2799.848 kb on - strand, within ECD_02670 at 2799.882 kb on - strand, within ECD_02670 at 2799.956 kb on - strand, within ECD_02670 at 2800.703 kb on + strand at 2800.709 kb on - strand at 2800.709 kb on - strand at 2800.709 kb on - strand at 2800.781 kb on + strand, within ECD_02671 at 2800.787 kb on - strand, within ECD_02671 at 2800.787 kb on - strand, within ECD_02671 at 2800.905 kb on + strand, within ECD_02671 at 2800.934 kb on + strand, within ECD_02671 at 2800.998 kb on - strand, within ECD_02671 at 2800.998 kb on - strand, within ECD_02671 at 2801.012 kb on - strand at 2801.044 kb on + strand at 2801.044 kb on + strand at 2801.045 kb on - strand at 2801.045 kb on - strand at 2801.045 kb on - strand at 2801.045 kb on - strand at 2801.162 kb on - strand, within ECD_02672 at 2801.162 kb on - strand, within ECD_02672 at 2801.172 kb on + strand, within ECD_02672 at 2801.173 kb on - strand, within ECD_02672 at 2801.173 kb on - strand, within ECD_02672 at 2801.173 kb on - strand, within ECD_02672 at 2801.182 kb on + strand, within ECD_02672 at 2801.217 kb on - strand, within ECD_02672 at 2801.217 kb on - strand, within ECD_02672 at 2801.366 kb on - strand, within ECD_02672 at 2801.366 kb on - strand, within ECD_02672 at 2801.368 kb on + strand, within ECD_02672 at 2801.368 kb on + strand, within ECD_02672 at 2801.456 kb on + strand at 2801.456 kb on + strand at 2801.456 kb on + strand at 2801.458 kb on + strand at 2801.458 kb on + strand at 2801.458 kb on + strand at 2801.458 kb on + strand at 2801.459 kb on - strand at 2801.459 kb on - strand at 2801.459 kb on - strand at 2801.459 kb on - strand at 2801.459 kb on - strand at 2801.493 kb on - strand, within ECD_02673 at 2801.493 kb on - strand, within ECD_02673 at 2801.493 kb on - strand, within ECD_02673 at 2801.507 kb on + strand, within ECD_02673 at 2801.508 kb on - strand, within ECD_02673 at 2801.508 kb on - strand, within ECD_02673 at 2801.508 kb on - strand, within ECD_02673 at 2801.508 kb on - strand, within ECD_02673 at 2801.508 kb on - strand, within ECD_02673 at 2801.508 kb on - strand, within ECD_02673 at 2801.508 kb on - strand, within ECD_02673 at 2801.550 kb on + strand, within ECD_02673 at 2801.551 kb on - strand, within ECD_02673 at 2801.551 kb on - strand, within ECD_02673 at 2801.551 kb on - strand, within ECD_02673 at 2801.551 kb on - strand, within ECD_02673
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,796,450 + ECD_02669 0.75 -0.6 2,796,451 - ECD_02669 0.75 +0.1 2,796,451 - ECD_02669 0.75 +0.5 2,796,453 + ECD_02669 0.75 +0.7 2,796,458 + ECD_02669 0.76 -0.9 2,796,459 - ECD_02669 0.76 +0.1 2,796,463 - ECD_02669 0.76 -1.6 2,796,489 - ECD_02669 0.77 +0.2 2,796,492 - ECD_02669 0.77 -0.5 2,796,492 - ECD_02669 0.77 -0.5 2,796,531 + ECD_02669 0.78 +0.2 2,796,548 - ECD_02669 0.79 -0.4 2,796,643 - ECD_02669 0.82 +0.5 2,796,656 - ECD_02669 0.82 +0.7 2,796,676 - ECD_02669 0.83 +0.2 2,796,693 - ECD_02669 0.84 +0.6 2,796,693 - ECD_02669 0.84 +0.9 2,796,720 + ECD_02669 0.85 -2.6 2,796,720 + ECD_02669 0.85 -0.4 2,796,720 + ECD_02669 0.85 +0.1 2,796,720 + ECD_02669 0.85 +0.8 2,796,721 - ECD_02669 0.85 +0.8 2,796,721 - ECD_02669 0.85 -0.2 2,796,888 + -0.2 2,796,888 + -0.7 2,796,888 + -0.0 2,796,888 + -0.8 2,796,888 + -0.3 2,796,888 + -0.2 2,796,888 + +0.1 2,796,888 + +0.5 2,796,888 + +0.6 2,796,888 + -0.7 2,796,888 + -0.2 2,796,888 + -1.6 2,796,888 + -0.8 2,796,888 + +0.1 2,796,888 + +0.0 2,796,889 - +0.1 2,796,889 - +0.0 2,796,889 - -0.7 2,796,889 - +0.1 2,796,889 - +0.2 2,796,889 - +0.8 2,796,889 - -0.5 2,796,889 - +0.2 2,796,889 - -0.2 2,796,889 - -1.0 2,796,899 + +0.2 2,796,899 + +0.7 2,796,899 + +0.3 2,796,900 - -1.0 2,796,900 - -0.7 2,796,900 - +0.1 2,796,900 - +0.4 2,796,900 - +0.6 2,796,900 - +0.3 2,796,917 + +0.7 2,796,973 - +0.9 2,796,973 - -0.5 2,797,008 + +0.6 2,797,024 + -0.0 2,797,024 + +0.1 2,797,024 + +0.1 2,797,024 + -0.7 2,797,025 - -0.6 2,797,025 - +0.5 2,797,025 - +0.6 2,797,025 - +0.6 2,797,025 - +1.0 2,797,025 - -0.0 2,797,025 - +0.3 2,797,025 - +0.8 2,797,025 - +1.0 2,797,025 - +0.7 2,797,025 - +0.7 2,797,025 - -0.8 2,797,027 - -0.2 2,797,027 - +0.7 2,797,027 - +0.8 2,797,060 - -0.1 2,797,106 - -0.6 2,797,106 - +0.5 2,797,135 + +0.6 2,797,136 - -0.3 2,797,262 - +0.6 2,797,267 + +1.0 2,797,267 + +0.6 2,797,267 + +0.1 2,797,267 + -0.3 2,797,267 + -0.8 2,797,267 + -1.0 2,797,267 + +0.2 2,797,268 - +0.6 2,797,268 - -0.6 2,797,268 - +0.8 2,797,268 - +0.7 2,797,268 - +0.5 2,797,268 - -1.1 2,797,268 - +0.2 2,797,268 - +0.1 2,797,268 - +0.1 2,797,268 - -0.6 2,797,268 - +0.5 2,797,268 - -1.7 2,797,269 + -0.3 2,797,269 + +0.2 2,797,269 + -0.7 2,797,269 + -0.5 2,797,269 + +0.8 2,797,270 - +0.4 2,797,270 - +1.3 2,797,270 - +0.9 2,797,270 - -0.0 2,797,270 - +1.0 2,797,271 + +0.3 2,797,272 - +0.5 2,797,301 + -0.6 2,797,301 + +0.8 2,797,302 - +0.1 2,797,302 - -0.3 2,797,302 - -1.2 2,797,306 + +0.2 2,797,332 + -1.2 2,798,723 - ECD_02670 0.41 +0.7 2,799,500 - ECD_02670 0.64 -0.2 2,799,848 - ECD_02670 0.74 +1.2 2,799,882 - ECD_02670 0.75 +0.8 2,799,956 - ECD_02670 0.78 +0.2 2,800,703 + +1.4 2,800,709 - -0.6 2,800,709 - +0.9 2,800,709 - +0.4 2,800,781 + ECD_02671 0.19 +0.4 2,800,787 - ECD_02671 0.20 +0.1 2,800,787 - ECD_02671 0.20 +1.1 2,800,905 + ECD_02671 0.57 -0.8 2,800,934 + ECD_02671 0.66 +1.6 2,800,998 - ECD_02671 0.85 +0.6 2,800,998 - ECD_02671 0.85 +0.4 2,801,012 - +0.6 2,801,044 + +0.5 2,801,044 + +0.4 2,801,045 - -0.1 2,801,045 - +0.3 2,801,045 - +0.0 2,801,045 - +0.9 2,801,162 - ECD_02672 0.33 +0.3 2,801,162 - ECD_02672 0.33 +0.3 2,801,172 + ECD_02672 0.35 -0.8 2,801,173 - ECD_02672 0.35 -0.4 2,801,173 - ECD_02672 0.35 -0.2 2,801,173 - ECD_02672 0.35 +0.3 2,801,182 + ECD_02672 0.38 +1.0 2,801,217 - ECD_02672 0.46 -0.1 2,801,217 - ECD_02672 0.46 +0.4 2,801,366 - ECD_02672 0.83 -0.6 2,801,366 - ECD_02672 0.83 +0.0 2,801,368 + ECD_02672 0.83 +0.8 2,801,368 + ECD_02672 0.83 +0.4 2,801,456 + -0.4 2,801,456 + +0.8 2,801,456 + -2.3 2,801,458 + -1.4 2,801,458 + -0.8 2,801,458 + +1.1 2,801,458 + -0.6 2,801,459 - -0.5 2,801,459 - -0.2 2,801,459 - +1.7 2,801,459 - +0.2 2,801,459 - -0.0 2,801,493 - ECD_02673 0.11 +0.5 2,801,493 - ECD_02673 0.11 -0.8 2,801,493 - ECD_02673 0.11 +0.0 2,801,507 + ECD_02673 0.13 +0.5 2,801,508 - ECD_02673 0.13 +0.3 2,801,508 - ECD_02673 0.13 +0.2 2,801,508 - ECD_02673 0.13 -0.2 2,801,508 - ECD_02673 0.13 +0.9 2,801,508 - ECD_02673 0.13 -1.0 2,801,508 - ECD_02673 0.13 +0.1 2,801,508 - ECD_02673 0.13 -0.6 2,801,550 + ECD_02673 0.21 +0.2 2,801,551 - ECD_02673 0.21 +1.1 2,801,551 - ECD_02673 0.21 -1.2 2,801,551 - ECD_02673 0.21 -0.0 2,801,551 - ECD_02673 0.21 -0.1
Or see this region's nucleotide sequence